Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01186 AAAACCCCTTCTCTTGCTCCGGCGTGCGTTAGGGTTTCTTCCTCTTCCGAACTCTATCGCAGAGTCTTCCATCTTTCGATTCAAAACATGGCTACAATGATATCTCGTTTTACGCATGCAGCCACGACTAGATCTTTTCTCCAAGTCGCGGCGACGGAGGAGGCTGCGCCGCCTCTTAGAGTCGTCCAGATTGAAGGGCTGGTCATTCTTAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGGCAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGTTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAGTTGAAGCTGATGGAGCTAATTACCAGCTGGAAATGATGAGATGCCTGAGGGAGGTTAATGTCGATAACAACACTGTTGGATGGTACCAATCTACTTTGCTCGGCTCCTTTCAGACTGTGGAACTTATTGAAACATTTATGAATTACCAGGAGAATATTAGACGTTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTTTGGCTCTGAAGGCTTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGGGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATATTTGAGGAAATACCGATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTCATGACTGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGACCGTCTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATACGGAGTTTTTGATAGAATGCATGGATGACTTGTCACTAGAACAACAAAAGTTCCAATTCTACTATAGGAGCTTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTCCAAAAGAGAAGGGCGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAGCCCTTGCCGGAAGAAGATCCTTCAAATCCCGTTTTCAAGCCCCTCCCCGAGCCTTCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAATCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGGCTGTATTTGATGAAGGCTTTGCATGAGGATTGA 1125 0.448 KTPSLAPACVRVSSSSELYRRVFHLSIQNMATMISRFTHAATTRSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEVEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPSNPVFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01186 374 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 53 358 - -
Vimu6g01186 374 CDD MPN_eIF3h 60 323 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vimu6g01186 374 Gene3D Cytidine Deaminase, domain 2 17 250 - -
Vimu6g01186 374 Pfam C-terminal region of eIF3h 181 373 IPR045810 -
Vimu6g01186 374 ProSiteProfiles MPN domain profile. 62 195 IPR037518 -
Vimu6g01186 374 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 57 374 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vimu6g01186 374 SMART pad1_6 61 194 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu6g01186 374 MobiDBLite consensus disorder prediction 306 331 - -
Vimu6g01186 374 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 60 163 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu6g01186 374 FunFam Eukaryotic translation initiation factor 3 subunit H 41 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01186 Vimu-Chr6 12102006 12106716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01186 125 374 Eukaryotic Initiation Factors Gene Family AT1G10840 84.000 1.43e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01186 K03247 - gmx:100795273 642.884