Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01171 TTGTCTCATCCATTGGTCCAAAGCCATCACCACCTGCCGGTGACGCACCCGCTCGTGACGGTAGCGCTGCTCTCTTCGTTTTTTCACAAACAGCACCATCACCAACATCAACGCCGGTTTCATTTCATCTTTATTCCAGGTTTCTGTTGCATTCCTCGATTCGGTTATCGGTTTTCGCGAGTGATTCTCACGGAATCAAAGGAGAAAGGGAGAGAGCGCTGGATCGAGACTCTCGATTCACTTTTTCTGATTTCACGGTTTCATTTTACTGTATTTGAATTACGCGTTTTCAGTTCTGATTCACGCGCTTTTCGACAAGGATACTACCGCAGAGGTGGATACGCTATTGACTTCGCTTTGATTCGAATCGAATCGGATTTCATTGCAATCATGACTCAGGCAGTGGAGGTTCTGAATAGGTATGGGACGGATATGGTGGGGGAGCCCAGAGGTTCTGATTCGGAGTGTTTGGCGGGGTTCGAGTGTTTTCTGAACATTGTGAGGGCACTGGGAATGGGATCGTGCATCTCGGAGGTTGGGGCTGGTGGTAGCTCCCCTCCTCTTCTTTCTGATTCCAATACGGATGGGAAGAGGAGGAGGTTGAGGGGTTCCTCGTCCTTTGATTTCAGAGTGCCTGGGAGGATGTTCTCGAATGGCTCAAGCGAGGTTGCATCCATGTTTTGTAAGCAAGGAAGAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTTGCTCCAAGGAAGACACCATTTTTTGTGGTGTTTTTGATGGTCACGGACCTTATGGCCACAAAGTTGCGAAGAAAGTTAGGGATTCTTTTCCTCTAAAGCTTAATGCCCAATGGGATTTGCATCATAAGAATAAAGATGGGGTCAGTGATCATAGCAGTGCCAACGGAAGTTATAAATCTGAAGGAAATGGATTTAGACTGGTGGATGAGAAAACTTACCCCACTTATCATGAACTTGATGAAACAGATATTACTTTGACATTGAAAGAGTCTTATCTGAAAGCTTGTAAGCTCATGGACAAAGAACTGAAAATGCATCCTGATATTGACTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAACAAGGGCTGGACCTTGTTATTGGAAATATTGGGGACTCGAGAGCTATATTGGGTACCAGAGATCACGATGATTCTCTTATTGCTGTTCAGTTGACTGTTGACCTTAAGCCAAATCTTCCAAGGGAAGAAGAGAGAATTAGGCTTCGTAGAGGAAGGGTTTTTTCCCTTCACAATGAACCTGAGGTGGCTCGAGTTTGGCTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCTCGTGCATTTGGAGACTTTTGCCTGAAAGACTTTGGATTGATTTCTGTTCCAGATATCTCATATCACCACCTTACCGAGAAGGATGAGTTTGTTGTGCTAGCGACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTCGTGGACATTGTAGCATCTGCTCCACGGTCTACTGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCAGGCATGGAGGACAAAATATCCTTTTTGCAAGGTTGATGATTGTGCCGCGGTTTGCCTCTTCTTCGATCCAGATACAGATTTCAAGTCAAATGATACCAAAGGCAAGTTGGTATCAGAGGCATCTGTTGACCACCAATCCGAGGATTTATCTTGA 1701 0.4527 MSHPLVQSHHHLPVTHPLVTVALLSSFFHKQHHHQHQRRFHFIFIPGFCCIPRFGYRFSRVILTESKEKGRERWIETLDSLFLISRFHFTVFELRVFSSDSRAFRQGYYRRGGYAIDFALIRIESDFIAIMTQAVEVLNRYGTDMVGEPRGSDSECLAGFECFLNIVRALGMGSCISEVGAGGSSPPLLSDSNTDGKRRRLRGSSSFDFRVPGRMFSNGSSEVASMFCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHKVAKKVRDSFPLKLNAQWDLHHKNKDGVSDHSSANGSYKSEGNGFRLVDEKTYPTYHELDETDITLTLKESYLKACKLMDKELKMHPDIDCFCSGTTAVTLVKQGLDLVIGNIGDSRAILGTRDHDDSLIAVQLTVDLKPNLPREEERIRLRRGRVFSLHNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLISVPDISYHHLTEKDEFVVLATDGIWDVLSNEEVVDIVASAPRSTAARALVESAVQAWRTKYPFCKVDDCAAVCLFFDPDTDFKSNDTKGKLVSEASVDHQSEDLS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01171 566 FunFam probable protein phosphatase 2C 33 218 540 - -
Vimu6g01171 566 CDD PP2Cc 223 537 IPR001932 -
Vimu6g01171 566 SMART PP2C_4 213 535 IPR001932 -
Vimu6g01171 566 Gene3D - 217 538 IPR036457 -
Vimu6g01171 566 MobiDBLite consensus disorder prediction 545 566 - -
Vimu6g01171 566 PANTHER PROTEIN PHOSPHATASE 206 535 IPR015655 GO:0004722|GO:0006470
Vimu6g01171 566 SUPERFAMILY PP2C-like 215 538 IPR036457 -
Vimu6g01171 566 ProSiteProfiles PPM-type phosphatase domain profile. 223 537 IPR001932 -
Vimu6g01171 566 Pfam Protein phosphatase 2C 298 515 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01171 Vimu-Chr6 12032815 12036847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01171 191 538 PP2C-type Phosphatase Gene Family AT1G16220 60.167 9.67e-151 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01171 - - vum:124830906 1051.97