Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01160 ATGGCAGCGGCGTTCCAGGAAGGAGGAGGTGCCGACGACGACGCCACCATCGACGTCCACACAACGCGTGGCACGCCCATCCGCTACCTTCCCCTCGACCATCTCTACTCTGCCACGTCGCCCTGCCGCGTCACGGCCAGCGGCTCTTCCAACGTCATGTCCAAGAAGGTAAAGGCTCGAAAACTCACCACTCTCGCCGCGCATCATCATTTCACCAACCACGACCACAAGAAAACCATGTCGTCCTCATCCTCCTCCTCCCACCCTCCTTCTTCCAAGCCTCCCTTGCTCTTCGTCTACTCGCGCCGCCGCAAGAGGCATTCCCCTTCCACGGCGCTGTGCAAAACCGAGGGCAAGGTGAATGCGGACGAGAATGAAGATGAGACAAGGTTGCTGAAGAAGAGGAAAATTGGGAGCACTGAGTTGGAGAGGCTGGGTGTGGATTTGAACACTGCGATTGGGGATGCTGACGGACCTCGATTGAGGGAATGCCGAAACCAATTTGGGAATTCTGGTGCTGCTGGGAATGTTAAGTGTGGTTCCTTGGAGAATTTGCCTAAAATGTCGCCTGATTCTCGCCCTGTGAAAAAATGGGTCGGAAGGAAGCTTTACATGATTGTTAATTGCGTTTGCTGCAGGTTGAGTTTTGATAATGCTGATCCTGAGGTGTTTGTTGGATTAAGATGCAAGGTTTTTTGGCCCATGGATTTGAAAGCGTACACTGGCTATGTCAGAGGTTATGACAAGGAAACTAAGATACATCATGTCAAGTATGATGATGGAGATGAGGAAAATTTAATTCTTTCAAATGAGAATATTAGATTCCATGTTTCCCGTGATGAGGTGAAACATTTAAAATTGAATCTTGCCAAAGTTCGTGAGAACAATGTCTCCGATTATGATGTTGAAGAGATGCTTGCCATGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCTAAGCTAACAGGTCATGCAATGTGGCCGGCTGTTGTTTTGGAGGAATCACTTGCTAGCAACTGTAAAGGTTTAAAGATGAGTTTGGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACCGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTGAGTGAACAGAAGCTTCCTTTGGAAATGCTAGAGTTACAGAAAAGATGTGCAGCTGATAATTGTAACAATGTAAGCAGAGAGGAAGGAGGATGTACAGATTCAGGCGATGATTGTTTACAAGGCGAGAGGACTTTATTGGCTAAGGAAACTGTTGAAACTTTTCCTTACGAATTAGAAGACCTCCAAATTCTAAGCCTTGGCAAAGAGAGTGGCTTCTTTTTTGTGCTCTTCCCTTTTACTTCTAGATTATTGGCATTTTGGCAGTTGCCGAATGACCCAGAAGTTTTTGCTTCTTATAAGATGGAGGTGTTGAGAGATCCAGAGTCCAAAGTTCGTCCTCTATTTAGAGTGACAGTTGATGGTGGCGAGCAGTTCAACGGTAATACTCCATCTGTTTGTTGGAACGAGATATTCAAAAAGATAAAAGAAATGGAAAAGAATGCTTCTGATAGCAGTCTTGCTGAAGGTGGGGTAGAAAAGGGCTACGCATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAGGTGCTTAAACTTATACAGGGATTGTCTAAATCCAAAATCTCTTCAAGGAATTCATCTTGCAAGTTAGGTTCCCAAAGACATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGACCTCGATAAGTGCAACGTGTGCCACATGGATGAGGTAGAGTTTCATTTTTCTTTTCAATTCTCTAGAGCTCCTGCCTGTTGTTTTAGACACCTGGATGCTCTTTTAGTTGCAATTTGTCTCTTGTTTCTCCCTTCTCCTGTGGTTTTAATCCATTCTAAGGAAATGGAAATGTTATTCCCTTGCAATGTGTGCCACATGGACGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGTTATGGAGAACTAGAACCTGTTAATGGGGTGCTATGGTTATGCAATTTATGTCGTTCAGGAGCTCCGCCTCCACCTTGCTGCTTATGTCCACTCATAGGTGGAGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGTTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGCTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAATAGTTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAAAATGAGGATAGGCTGTATCTGCTTTCTGTTGATGATGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAACCGTCCAATGAACATTCTGTTGCTGATGATCGTATAGTTCGAGTAGCTGGTCTATGTTCAGACTATGAACCACCGCCCAATCCATCTGGTTGTGCTCGAAGTGAACCATATGACTACTTTGGCAGGAGAGGTCGAAAGGAACCTGAAGCACTTGCAGCTGCATCATTGAAACGGTTGTTCGTGGAGAATCAGCCTTACTTAGTAGGTGGATACTGCCAGCATGGATCATTAAATGATCCAGAGCCTTCTGGCAGAGGAGTCTGCTCCAAATTTTTTTGTAGCCAACAAAGGCTAAGAACATCTCTGATTGACACATCTAACAACATACTTTCTATCTCTGAAAAATATGAGTACATGAGGGAAACCTTTCGGAAGCGGCTTGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCACATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCACCTATAGCTGACCGGAGAGAACACTTTATATACAATTCATTGGTGGGTGCTGGAACATATATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATAAACCATTCTTGTGCGCCAAATTGCTATTCAAGAGTAATAAGTGTTAATGGCGACGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATTGATGAACGGCTTGCTTGTTACTGTGGCTTCCCAAAGTGCCGAGGTATAGTAAACGATACGGAAGCAGAAGAGCGAGCTGCTACCCTTTATGCACCAAGAAGGGAATTGATAGATTGGAGAGGAGAATGA 3459 0.4389 MAAAFQEGGGADDDATIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKVKARKLTTLAAHHHFTNHDHKKTMSSSSSSSHPPSSKPPLLFVYSRRRKRHSPSTALCKTEGKVNADENEDETRLLKKRKIGSTELERLGVDLNTAIGDADGPRLRECRNQFGNSGAAGNVKCGSLENLPKMSPDSRPVKKWVGRKLYMIVNCVCCRLSFDNADPEVFVGLRCKVFWPMDLKAYTGYVRGYDKETKIHHVKYDDGDEENLILSNENIRFHVSRDEVKHLKLNLAKVRENNVSDYDVEEMLAMAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLEESLASNCKGLKMSLGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCAADNCNNVSREEGGCTDSGDDCLQGERTLLAKETVETFPYELEDLQILSLGKESGFFFVLFPFTSRLLAFWQLPNDPEVFASYKMEVLRDPESKVRPLFRVTVDGGEQFNGNTPSVCWNEIFKKIKEMEKNASDSSLAEGGVEKGYASGSDMFGFSNPKVLKLIQGLSKSKISSRNSSCKLGSQRHNNLPLGYRQVHINWFDLDKCNVCHMDEVEFHFSFQFSRAPACCFRHLDALLVAICLLFLPSPVVLIHSKEMEMLFPCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADDRIVRVAGLCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNDPEPSGRGVCSKFFCSQQRLRTSLIDTSNNILSISEKYEYMRETFRKRLAFGKSRIHGFGIFAKHPHKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRRELIDWRGE 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01160 1152 SUPERFAMILY FYVE/PHD zinc finger 680 748 IPR011011 -
Vimu6g01160 1152 SMART set_7 988 1112 IPR001214 GO:0005515
Vimu6g01160 1152 ProSiteProfiles SET domain profile. 988 1106 IPR001214 GO:0005515
Vimu6g01160 1152 MobiDBLite consensus disorder prediction 68 96 - -
Vimu6g01160 1152 Coils Coil 415 435 - -
Vimu6g01160 1152 Pfam PWWP domain 321 408 IPR000313 -
Vimu6g01160 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 864 IPR013083 -
Vimu6g01160 1152 ProSiteProfiles Zinc finger PHD-type profile. 684 735 IPR019787 -
Vimu6g01160 1152 Pfam PHD-zinc-finger like domain 740 861 - -
Vimu6g01160 1152 SUPERFAMILY SET domain 982 1125 IPR046341 -
Vimu6g01160 1152 MobiDBLite consensus disorder prediction 78 92 - -
Vimu6g01160 1152 ProSiteProfiles FYR domain FYRC motif profile. 518 604 IPR003889 GO:0005634
Vimu6g01160 1152 CDD SET_SETD1-like 976 1124 - -
Vimu6g01160 1152 Pfam PHD-finger 699 733 - -
Vimu6g01160 1152 Pfam SET domain 999 1105 IPR001214 GO:0005515
Vimu6g01160 1152 Gene3D - 221 276 - -
Vimu6g01160 1152 Gene3D - 462 596 - -
Vimu6g01160 1152 ProSiteProfiles Post-SET domain profile. 1112 1128 IPR003616 -
Vimu6g01160 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 676 732 IPR013083 -
Vimu6g01160 1152 ProSiteProfiles Extended PHD (ePHD) domain profile. 738 862 IPR034732 -
Vimu6g01160 1152 ProSitePatterns Zinc finger PHD-type signature. 687 732 IPR019786 -
Vimu6g01160 1152 Gene3D - 307 419 - -
Vimu6g01160 1152 FunFam Histone-lysine N-methyltransferase 921 1145 - -
Vimu6g01160 1152 CDD ePHD_ATX1_2_like 747 861 IPR041956 -
Vimu6g01160 1152 SMART PHD_3 796 862 IPR001965 -
Vimu6g01160 1152 SMART PHD_3 686 733 IPR001965 -
Vimu6g01160 1152 CDD Tudor_Agenet_AtEML-like 225 275 - -
Vimu6g01160 1152 SUPERFAMILY Tudor/PWWP/MBT 314 414 - -
Vimu6g01160 1152 Gene3D SET domain 943 1142 IPR046341 -
Vimu6g01160 1152 Pfam F/Y rich C-terminus 520 593 IPR003889 GO:0005634
Vimu6g01160 1152 SMART fyrc_3 522 616 IPR003889 GO:0005634
Vimu6g01160 1152 ProSiteProfiles PWWP domain profile. 320 383 IPR000313 -
Vimu6g01160 1152 CDD PWWP_AtATX1-like 319 414 - -
Vimu6g01160 1152 FunFam Histone-lysine N-methyltransferase 736 864 - -
Vimu6g01160 1152 SMART PWWP_4 318 381 IPR000313 -
Vimu6g01160 1152 PANTHER PHD FINGER PROTEINS 685 1136 - -
Vimu6g01160 1152 CDD PHD_ATX1_2_like 687 732 IPR042010 -
Vimu6g01160 1152 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01160 Vimu-Chr6 11946936 11959299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01160 687 832 C2H2 Transcription Factor Family AT3G14740 39.735 6.84e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu6g01160 zf-HC5HC2H_2 4.2e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01160 - - gmx:100806736 1868.59