Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01156 ATGTCTGACCATGTCACTAGTCCGGCCAGCTCCACTCCCCTCTCCTTCTTCTTCACTCGTGAAACAAAGAGTCAAGGCTTTTCTTCACCTCCATCAAACGGGATAAAGTTGCGACTTCTCACTAATCACTTGAGAGTGAATGTTGGAAACATTGACGATCACTTTTTTCAGTATAGTGTATCTCTTTTGTATAAAGATGGACGCCTTTTTAAGGATGGCGAGAAAACTATTTTTACCCTTGGTTGTCTTGCCCGTAATAGTCTTGAGTTTACGGTTATTCTTGAGGATGTTGTCTCTGTTGGCAGAAATAATGAAAATGCTAACCCTGATAGACATAGAGAAATCAGTGAAAACGACAAGAAGAGAATGAGATCTCCGCTACTCAAGTTACCATGTATTAATGTTGGAAAGCTGAAGCGGCCAACATATATTCCACTTAAGCTTTGCTCTTTGGTATCCCTTCAATGCTATACTAAAGCTCTAACCACACTGCAAAGATCCTCATTGGTGGAGAAGACTAGACAAAAAGATGCCAGAGAGGATGAGAGTGTTGGCAGATGTTAG 564 0.4113 MSDHVTSPASSTPLSFFFTRETKSQGFSSPPSNGIKLRLLTNHLRVNVGNIDDHFFQYSVSLLYKDGRLFKDGEKTIFTLGCLARNSLEFTVILEDVVSVGRNNENANPDRHREISENDKKRMRSPLLKLPCINVGKLKRPTYIPLKLCSLVSLQCYTKALTTLQRSSLVEKTRQKDAREDESVGRC 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01156 187 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 120 180 - -
Vimu6g01156 187 SUPERFAMILY PAZ domain 127 176 IPR036085 GO:0005515
Vimu6g01156 187 Gene3D paz domain 99 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01156 Vimu-Chr6 11934963 11936145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01156 129 176 Eukaryotic Initiation Factors Gene Family AT1G48410 39.583 2.79e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01156 K11593 - rcu:8279608 104.375