Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01152 ATGATTCATGCCTCATTTTGGAGCTTCCGGGATTGGTTTCTGGCTTTGTTTGTTTGTTGTTCTTTGATGTTTAGGAAAAGGCACATCGCTTCTTCTCTTGTTGCCAGGGAATTGTTGGCACTTCAGCCACTTTTTATTATCTTCTTGTTCAGCTTGCACCACAACACTGTGCAATGTCAAGGAAGGCTGAGTAAACATGTTTCTTCAGAGCCTCCATCGCCTTCTAGGCCATCACCACCTTCATCATCAGGATACAAGGATGACCCCAAGAAGATAATTTTGAGCTTGGTTTTAGGAGCAGTAACTGGACTAGTTTGTTCTGTTTTCTTTGCACTTGTGGTACGTTGTGTGGTGCAGTACCTAAACCGCACACCAATCCTCAAGGGGCCTGTTATTTTCTCCCCCAAAATTGCCCCCAAGACTCTCCAATTAGCTTTGGCGAAGGAAAACCACTTGCTTGGTTCGAGTCCTAATGGGAAATACTACAAAACTGTGCTTGACAATGGACTCACTATTGCAGTGAAAAGGCTAACACCCTTTGGAAGTAGCTCCCCAGAGGCTAAGAAAAAATCAGTGAAGAGGCAGATACAAACTGAGCTAGAGCTTCTTGCAAGCTTAAGACACAGGAACTTGATGAGTTTGAGAGCCTATGTACGTGAGCCTGATGGTTTCTCATTGGTTTATGATTATGTGTCCACTGGGAGTCTTGCTGATGTGATGAATAGAGTTTGGGAGAATGAATTGGCCTTTGGTTGGGAAGTTAGGCTGAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACCTGTGCGCCTCAGATACTGCTGCACTACAACTTGAAGCCAACAAATGTGATGCTGGATGGTGATTTTGAACCCAGATTAGCGGACTATGGTTTGGCCAAACTTCTACCCAACTTGGATAGAGGAACTTCTCTCTACACTCCTCCTGAATGTTTCCACAACTGCAGGTACACTGACAAAAGTGACATCTTCAGTTTTGGCATGATACTAGGTGTTTTGTTAACTGGTAAGGACCCTACAGATCCATTCTTTGGAGAAGCAGCGAGTGGTGGAAGTTTGGGAGGTTGGTTGAGGCACTTGCAGCAAGCTGGTGATGCGAGGGATGCCCTTGATAAGAGCATGTTAGGGGAAGAAGGAGAGGAAGATGAGATGCTAATGGCTGTTAGGATTGCTGCTGCATGCCTCTCTGATATGCCTGCAGACAGGCCTTCTAGTGACGAGCTTGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1290 0.4543 MIHASFWSFRDWFLALFVCCSLMFRKRHIASSLVARELLALQPLFIIFLFSLHHNTVQCQGRLSKHVSSEPPSPSRPSPPSSSGYKDDPKKIILSLVLGAVTGLVCSVFFALVVRCVVQYLNRTPILKGPVIFSPKIAPKTLQLALAKENHLLGSSPNGKYYKTVLDNGLTIAVKRLTPFGSSSPEAKKKSVKRQIQTELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLADVMNRVWENELAFGWEVRLRIAVGVVKGLQYLHFTCAPQILLHYNLKPTNVMLDGDFEPRLADYGLAKLLPNLDRGTSLYTPPECFHNCRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGGWLRHLQQAGDARDALDKSMLGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01152 429 MobiDBLite consensus disorder prediction 65 86 - -
Vimu6g01152 429 SUPERFAMILY Protein kinase-like (PK-like) 150 423 IPR011009 -
Vimu6g01152 429 Gene3D Transferase(Phosphotransferase) domain 1 231 428 - -
Vimu6g01152 429 CDD STKc_IRAK 153 426 - -
Vimu6g01152 429 ProSiteProfiles Protein kinase domain profile. 147 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01152 429 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 55 425 - -
Vimu6g01152 429 Gene3D Phosphorylase Kinase; domain 1 140 230 - -
Vimu6g01152 429 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 231 428 - -
Vimu6g01152 429 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 139 230 - -
Vimu6g01152 429 Pfam Protein kinase domain 149 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01152 Vimu-Chr6 11887726 11889646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01152 57 426 Receptor kinase-like Gene Family AT2G31880 32.203 1.25e-63 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vimu6g01152 Pkinase 1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01152 - - vra:106759565 818.92