Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01151 ATGTGTTCTCTTCTTTGGAGTTCCATTGTTATGTGTGTAGCACTTCAACTTCTTCAGCTTGGCATTGTGCACCCTTCATCCTCTCATATCAGGATCACTCACTTACCGGGCCAACCCCAAGTTGAGTTTCAGCAGTTTTCAGGTTATGTAAATGTTGATCACAGAAACCAGCAAGCACTCTTTTTCTACTTTGCTGAAGCTGAAAAGGATGCAGCTTCCAAGCCCCTTGTTCTGTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTTGGGGTTGGTGCGTTTTCAGAGAATGGACCATTTAGGCCCAAAGGTGAAGGCTTGATTAGGAATCAATTCAGCTGGAACAGAGAAGCTAATATGCTGTATTTGGAAACGCCAATTGGAGTTGGATTCTCTTACTCAAGTGATACTTCTGCTTATGAGGCCAGGGATAACTTGGTGTTCTTGAAAAACTGGTTTATAAAGTTCCCAGAATACAGAAACAGAAGTTTATTCATTGTAGGAGAAAGCTATGCTGGCCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGCTGTTCAATCTGAAAGGCATTGCTCTTGGTAATCCAGTTCTAGAATTTGCAACGGATTTCAATTCGAGAGCAGAGTTCTTCTGGTCGCATGGGTTAATTTCAGATACAACGTACGAAGTGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATATTACAATGGTGCTGTTTCTCCTGTCTGTTCAAGTGTTATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTGGACAAGTATGATGTGACCCTTGATGTTTGTTTATCTTCAGTGTTTTCACAAACCAAAGTCCTCAATCCCCAGCAAGTCACTGAGACCATAGATGTATGTGTGGAAGATGAAACAGTCAATTATCTGAACAGAAAAGATGTGCAATCAGCTTTGCATGCACGTCTTGTTGGAGTTCAAAGATGGTCTGCTTGCAGCAATGTCCTGGATTATGAGCTGCGTGACTTGGAAATACCAACAATCACTGTTGTGGGGAAGCTAGTACAGGAGGGAATACCAGTACTAGTTTACAGTGGTGATCAGGATTCAGTAATCCCTCTGACTGGAAGTAGAACATTAGTACATAAATTGGCAAAAAAGCTAGGATTGAAAACCACTGTGCCATACAGGGTGTGGTTTGAGAAGCAGCAGGTGGGTGGGTGGACTCAAGTTTATGGTGACATCCTTTCATTTGCCACCATCAGGGGAGCATCACATGAGGCTCCATTTTCACAGCCTGAGAGGTCACTTGTGCTGTTCAAGTCCTTCTTAGAAGGACGACCAATGCCACAAGAGTTTTGA 1365 0.4271 MCSLLWSSIVMCVALQLLQLGIVHPSSSHIRITHLPGQPQVEFQQFSGYVNVDHRNQQALFFYFAEAEKDAASKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEGLIRNQFSWNREANMLYLETPIGVGFSYSSDTSAYEARDNLVFLKNWFIKFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDTTYEVFTSVCNYSRYVREYYNGAVSPVCSSVMSQVSTETSRFVDKYDVTLDVCLSSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHARLVGVQRWSACSNVLDYELRDLEIPTITVVGKLVQEGIPVLVYSGDQDSVIPLTGSRTLVHKLAKKLGLKTTVPYRVWFEKQQVGGWTQVYGDILSFATIRGASHEAPFSQPERSLVLFKSFLEGRPMPQEF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01151 454 FunFam Carboxypeptidase 25 451 - -
Vimu6g01151 454 ProSitePatterns Serine carboxypeptidases, histidine active site. 417 434 IPR033124 GO:0004185
Vimu6g01151 454 Gene3D alpha/beta hydrolase 26 452 IPR029058 -
Vimu6g01151 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Vimu6g01151 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 152 177 IPR001563 GO:0004185|GO:0006508
Vimu6g01151 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Vimu6g01151 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 417 430 IPR001563 GO:0004185|GO:0006508
Vimu6g01151 454 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 434 IPR001563 GO:0004185|GO:0006508
Vimu6g01151 454 Pfam Serine carboxypeptidase 36 447 IPR001563 GO:0004185|GO:0006508
Vimu6g01151 454 FunFam Carboxypeptidase 348 447 - -
Vimu6g01151 454 SUPERFAMILY alpha/beta-Hydrolases 32 451 IPR029058 -
Vimu6g01151 454 ProSitePatterns Serine carboxypeptidases, serine active site. 166 173 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01151 Vimu-Chr6 11886756 11894399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01151 310 450 Calmodulin-binding Proteins AT2G22960 26.241 2.94e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01151 K16297 - gmx:100805130 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01151 6 11886756 11894399 Vimu6g01151 6 11886756 11894399 ECH