Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01150 ATGGGATTTGGTAGAGCTTGGGTGAGCAGTGAGAGTGAGAGAAAGCAACAACTGTATCAAGAAAGTCCTCGTACATTTGATCAGGCATCAAAGGTGGGATTTGGTAGAGCTTGTGTGAGCAGTGAGAGTGAGAGAAAGCAACAGCTGTATCAAGAGAGTCCTCGTACATTTGATCAGGCATCAAAGGTGGGATTTGGTAGAGCTTGGGTGAGCAGTTCTCTCTTAACTGACTTGATGTTCCTAAGATTGCTTCTCCTTGAATTCTTTGATGAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTAAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACTGAAGGTCTCGGGGAGGCCTATGATGGAGACATTGCATTTGCCAGTGCCCTAGAAACTTTTGGTGGTGGACATAATGACCCAATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATAGCCCTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGGTCACAGGTTGAGCATATGCTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTGCAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGTCTTATCTATGACCAGACTCGGGAGAGGTTTCTGTCCCTAAGAAAAGGCACAAAAACTGATGTAGCTACTGCTCTGGAAGAGGAGCTTCATAGTGCAAGATCAACATTTGAGCAAGCTCGATTTAATCTGGTTACTGCATTGTCAACTGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTACGAGTTGTTGCACCAAATGGAGCCGTATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAGGCAGCCCTGAATGAAAGAATGCAAGAATACAAACGACAGATTGATCGGGAGAGTAGGTGGGCCTCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCTATTGGTAGAAGTTCACATAAGATGATAGAGGCTGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGTGACTGGAAGAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTATCGTAAGCAGTGCAGCAAATCATCTGGGTCGAGTAGTCAACATTCTGGCCAGAGGAATAGTTCTGAGCTAGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCACCATGGTGGTGTACATGATGAAAAATCTGTTGCTCACCACACTGTGAACCTGCTTACGTCAACAATTAAAGTAGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCCTCATTACTGAGTTCTCAGATCCCTGAAAGGATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGCAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTTGAAGAATGTGCAGCAGATAGAAGTCTTTCTTCTGCACATCTGGAGCGCCCCTCAAGAAGTTTGCAACAGCAGCGCTCCTGCACTAAAATTGAGAAGCCGATAGATGTGCTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCTCCTGAACCCGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTGCATCGCAACCTTGGTGTGCATATATCAAAGGTCAGGTCTCTTACTTTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCCCTGTGGGAGGAATTATTACAATCAAGAAGTGCCATTCAGGTTGATCTTGTCCCTACAGGCTTAAGCAAGTCTGATAAGCCGCTGATGTTCTTCTTTCCCAAGCCGTGTCAATCTGATTCTCTATCAGTGAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAGGCCAAAGGACAACCGACTCTCGGTGGCACAACAAATCTGGGAAGCTGTTCATGCTAATGACAAAAAAGCTGTATATCGATACATTGTTAATTCTGACGTTGATGTTAATGTTGCTTATGAGCAAATGTGCAACAGTTCCCTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACTAGCCATGATCACAGCTCTTCTTTGGCCGGCAACACATTGGACTGGTCCTCAAGTAAAGAAGGCCCGGTCATGGACAATTTAGATGGGTGCACCCTACTTCACCTTGCATGTGAAACTGCAGATATTGGCATGGTGGAGCTCCTCCTACAGTATGGTGCAAATGTTAATGCAACTGATTCAAGAGGTCAAACGCCACTACATCGTTGTATTCTCAAAGGCAGATCTGCATTTGCAAGATTAATGCTTTCAAGGGGAGCAGATCCGCGAGCTGTGGATGAGCAGGGAAGAACCCCAATTGAACTTGCTGCTGAGTCAAATGCTGGTGAAAGAGAAGTCCATGCTCCATTAAATGACTCTAATGGATGA 2694 0.4373 MGFGRAWVSSESERKQQLYQESPRTFDQASKVGFGRACVSSESERKQQLYQESPRTFDQASKVGFGRAWVSSSLLTDLMFLRLLLLEFFDEQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKTDVATALEEELHSARSTFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHHRSTSESSSFESSDFDHSAVEECAADRSLSSAHLERPSRSLQQQRSCTKIEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSLWEELLQSRSAIQVDLVPTGLSKSDKPLMFFFPKPCQSDSLSVKEKFIHAKYAEKLFVRRPKDNRLSVAQQIWEAVHANDKKAVYRYIVNSDVDVNVAYEQMCNSSLTLAKVMLLQEQTSHDHSSSLAGNTLDWSSSKEGPVMDNLDGCTLLHLACETADIGMVELLLQYGANVNATDSRGQTPLHRCILKGRSAFARLMLSRGADPRAVDEQGRTPIELAAESNAGEREVHAPLNDSNG 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01150 897 SMART arf_gap_3 577 722 IPR001164 GO:0005096
Vimu6g01150 897 CDD ArfGap 580 709 - -
Vimu6g01150 897 ProSiteProfiles PH domain profile. 369 505 IPR001849 -
Vimu6g01150 897 ProSiteProfiles ARF GTPase-activating proteins domain profile. 577 722 IPR001164 GO:0005096
Vimu6g01150 897 MobiDBLite consensus disorder prediction 863 897 - -
Vimu6g01150 897 MobiDBLite consensus disorder prediction 515 538 - -
Vimu6g01150 897 SUPERFAMILY ArfGap/RecO-like zinc finger 577 717 IPR037278 -
Vimu6g01150 897 ProSiteProfiles Ankyrin repeat region circular profile. 804 835 - -
Vimu6g01150 897 Gene3D Arfaptin homology (AH) domain/BAR domain 51 328 IPR027267 -
Vimu6g01150 897 SUPERFAMILY BAR/IMD domain-like 90 392 IPR027267 -
Vimu6g01150 897 Pfam BAR domain of APPL family 89 309 IPR004148 GO:0005515|GO:0005737
Vimu6g01150 897 Coils Coil 304 324 - -
Vimu6g01150 897 PANTHER CENTAURIN/ARF 89 893 IPR045258 GO:0005096
Vimu6g01150 897 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 559 723 - -
Vimu6g01150 897 SUPERFAMILY Ankyrin repeat 738 882 IPR036770 -
Vimu6g01150 897 CDD BAR_SFC_plant 92 292 IPR035670 -
Vimu6g01150 897 MobiDBLite consensus disorder prediction 330 346 - -
Vimu6g01150 897 MobiDBLite consensus disorder prediction 524 538 - -
Vimu6g01150 897 SMART PH_update 370 507 IPR001849 -
Vimu6g01150 897 SUPERFAMILY PH domain-like 370 521 - -
Vimu6g01150 897 Gene3D - 721 889 IPR036770 -
Vimu6g01150 897 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 85 328 - -
Vimu6g01150 897 Gene3D - 362 515 IPR011993 -
Vimu6g01150 897 MobiDBLite consensus disorder prediction 325 347 - -
Vimu6g01150 897 Gene3D Arf GTPase activating protein 557 720 IPR038508 -
Vimu6g01150 897 Pfam Ankyrin repeats (many copies) 807 857 IPR002110 GO:0005515
Vimu6g01150 897 CDD PH_ACAP 372 509 - -
Vimu6g01150 897 Pfam Putative GTPase activating protein for Arf 580 716 IPR001164 GO:0005096
Vimu6g01150 897 Pfam PH domain 371 504 IPR001849 -
Vimu6g01150 897 ProSiteProfiles Ankyrin repeat profile. 804 836 IPR002110 GO:0005515
Vimu6g01150 897 Coils Coil 86 106 - -
Vimu6g01150 897 ProSiteProfiles Ankyrin repeat profile. 837 869 IPR002110 GO:0005515
Vimu6g01150 897 SMART ANK_2a 804 833 IPR002110 GO:0005515
Vimu6g01150 897 SMART ANK_2a 837 866 IPR002110 GO:0005515
Vimu6g01150 897 ProSiteProfiles Ankyrin repeat region circular profile. 837 869 - -
Vimu6g01150 897 SMART 5bar 73 295 IPR004148 GO:0005515|GO:0005737
Vimu6g01150 897 PRINTS HIV Rev interacting protein signature 631 652 IPR001164 GO:0005096
Vimu6g01150 897 PRINTS HIV Rev interacting protein signature 608 625 IPR001164 GO:0005096
Vimu6g01150 897 PRINTS HIV Rev interacting protein signature 589 608 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01150 Vimu-Chr6 11875286 11884827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01150 588 728 C2H2 Transcription Factor Family AT3G07940 41.549 1.93e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01150 K12489 - gmx:100789134 1474.53