Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01149 ATGGCTCTGGACCAGCCTTCCAACCCCAACGCCGTTGACGGGGCGGGTAACGGCGCCGCGCCGTGCTCCGCCGCGGACGGAGGCGACGACGGAAGGCCGCCGGCGAGGCTGCCGCGGTGGACGCGGCAGGAGATTCTGGTGCTGATTCAGGGGAAGAGTGACGCGGAGAACCGGTTCAGACCGGGTCGGGGGAGCGGTTCGGCGTTCGGCTTGAGCGAACCGAAATGGGCGCTGGTCTCGGCGTACTGCAAAAAGCACGGCGTGAACCGGGAGCCGGTGCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTACAAGAAGATCAAGGAGTGGGAGTCGCAGGTCAGGGACGAAACGGAGTCGTTTTGGCTCATGAGGAATGATTTGAGGAGGGAGAGGAAATTGCCCGGTTATTTTGACAGGGAAGTGTATAATATTCTCGATTCTCCGTCCACGGCGGCTGCCGCGACTGTGGAGACTCCTACGGCCGCGGTTGAGGTGGCGGTGGATGAGGAAGTGCACCTGTATGATAGTAATCGGAGAGTTGGAAGTGATGATGGGTTGTTCTCTGATTGTGAGAAGGAGGAGGTTTTGCTTTCGGCCCTTTCCAAGGTTGTTCCTGCACCCGTTCCAATCTCAGGTTCGTTTTTTGGAATCAATTTTGGACATGCCTTTTGTGATTTTGTGAACTATTGTTGTGTTATAGTAAGGGCTCTTTTTTTTCCCCCTTTTCCTCTACTTTTGGTACTGTTGATTTGTCGAGGGTGA 771 0.5642 MALDQPSNPNAVDGAGNGAAPCSAADGGDDGRPPARLPRWTRQEILVLIQGKSDAENRFRPGRGSGSAFGLSEPKWALVSAYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLRRERKLPGYFDREVYNILDSPSTAAAATVETPTAAVEVAVDEEVHLYDSNRRVGSDDGLFSDCEKEEVLLSALSKVVPAPVPISGSFFGINFGHAFCDFVNYCCVIVRALFFPPFPLLLVLLICRG 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01149 256 MobiDBLite consensus disorder prediction 1 37 - -
Vimu6g01149 256 CDD GT1 38 110 - -
Vimu6g01149 256 ProSiteProfiles Myb-like domain profile. 32 103 IPR001005 -
Vimu6g01149 256 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 6 214 - -
Vimu6g01149 256 Gene3D - 40 108 - -
Vimu6g01149 256 Pfam Myb/SANT-like DNA-binding domain 39 126 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01149 Vimu-Chr6 11868068 11868838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01149 39 111 Trihelix Transcription Factor Family AT1G33240 34.247 8.12e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu6g01149 Myb_DNA-bind_4 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01149 - - gmx:100788594 374.785