Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01147 ATGGAAAACTACCACTATCTTCAGAAACATCAAAGGAGGAAGAGAAAGACGACAGAGTACAAGAATTTGATGCTTATGCATCATGGTCTTCGGAAACTGACATGTCTGCAATGGTTTCAGCTCTTGCTCAAGTTATGGCAACTGCAAATCAGAACCCTCCCATCTCACAATCGTCATCTTTTCCTCTCTCAAACTTCCACACCAAAGATCAACCTCAACCTTCTTCAGATCAAGGCACATTACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATTCGTGACCCTAAAAAAGCAGCAAGAGTGTGGTTAGGAACGTTTGAAACAGCAGAAGATGCAGCCATTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCAAAGCTTAATTTCCCAGAAAGAGTTCATCACAATGTTTCTTTTATGCATCAACCTTCATCAAACACTTTTGCTGCCACTCAATCTCTTTCTTCTTCTGTTCATGTTTCTGCTCCATCCTCATTTTCCACACACGATCAACCTGGCCACCAACTTTTTCCAAACCTCCTTCAATATGCTCAGATTCTTTCAAGTGATGATGCACAGTTTACTTACTACACATCCCATCTTTTCAATCAACAACAACAACAGCATCAACAGCAACAACAACAAGATCCTTTCGGCTCTCAGTTTTCTACCACCTTTTCTTCAACCTCTTCTCAAGCATCCCACTTCTACAACCACCAACAACAATTTGATGAACAGGGACCTGATCACTCACCCCAGTAG 783 0.4215 MENYHYLQKHQRRKRKTTEYKNLMLMHHGLRKLTCLQWFQLLLKLWQLQIRTLPSHNRHLFLSQTSTPKINLNLLQIKAHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDKAALKFKGTKAKLNFPERVHHNVSFMHQPSSNTFAATQSLSSSVHVSAPSSFSTHDQPGHQLFPNLLQYAQILSSDDAQFTYYTSHLFNQQQQQHQQQQQQDPFGSQFSTTFSSTSSQASHFYNHQQQFDEQGPDHSPQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01147 260 FunFam Ethylene-responsive transcription factor 2 79 138 - -
Vimu6g01147 260 MobiDBLite consensus disorder prediction 212 260 - -
Vimu6g01147 260 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
Vimu6g01147 260 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Vimu6g01147 260 CDD AP2 79 138 IPR001471 GO:0003700|GO:0006355
Vimu6g01147 260 PANTHER DNA-BINDING DOMAIN 34 218 IPR044808 GO:0003700|GO:0009873
Vimu6g01147 260 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Vimu6g01147 260 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Vimu6g01147 260 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Vimu6g01147 260 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Vimu6g01147 260 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01147 Vimu-Chr6 11849182 11852363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01147 78 253 AP2-EREBP Transcription Factor Family AT5G13330 46.486 1.73e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g01147 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01147 - - vun:114185501 271.937