Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01145 ATGCAGAAGAAGACCCATGAGAGTATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGGAAGTACACCCTTGGTTACAAGACCGTTCTCAAATCGCTCAGGAGCTCCAAAGGTGTCACTTTTCTACACTATTTATCATTGCTAGTTTTTACTGTTGGCAATATCTTATTTTTCATAGCATTACTTGCCATGTCACTGTTAATGGAAGTGGCAATTATGTCTTATGATCTTATTGCAAAACAGGCTGCTGTTGTAAATATTTGTGGTACATGTATAAAACGATATCTAAATGTTGTTGAATTCGTTTCAGGAAAACTGATTATCATTGCCAACAACTGCCCTCCTTTGAGGAAGTCGGAGATAGAATACTATGCTATGTTAGCAAAGGTCGGAGTTCATCACTACAATGGGAACAATGTTGATTTGGGAACTGCATGCGGCAAATATTACAGAGTGTGCTGTCTCAGCATTATTGATCCTGGTGATTCTGATATCATCAAGACACTGCCTGGTGAACTATAA 522 0.3927 MQKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGVTFLHYLSLLVFTVGNILFFIALLAMSLLMEVAIMSYDLIAKQAAVVNICGTCIKRYLNVVEFVSGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPGEL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01145 173 Gene3D - 1 168 IPR029064 -
Vimu6g01145 173 SUPERFAMILY L30e-like 104 167 IPR029064 -
Vimu6g01145 173 ProSitePatterns Ribosomal protein L30e signature 2. 141 161 IPR022991 -
Vimu6g01145 173 FunFam 60S ribosomal protein L30 68 169 - -
Vimu6g01145 173 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 103 166 IPR004038 -
Vimu6g01145 173 SUPERFAMILY L30e-like 8 39 IPR029064 -
Vimu6g01145 173 PANTHER RIBOSOMAL PROTEIN L30 2 38 IPR039109 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01145 Vimu-Chr6 11839839 11841166 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01145 3 42 Cytoplasmic Ribosomal Protein Gene Family AT3G18740 82.500 3.63e-15 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01145 K02908 - gmx:100793713 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01145 6 11839839 11841166 Vimu8g00356 8 8941347 8942848 PCT