Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01138 ATGGAAATGTATCTGTCTGGAGATATAACTGGTGGCAATGCTCGTTGTATTGCAATGCTTCGAGCATTTCAAGAGGCCATTAAAGACTACGGGGTTCCATCCGAGAAGACTCTGGTGAGAGACTTAACAGCAAGATTGAGTAGTTATGTTTCTTTTCTCATTGAGTGTCGACCACTTTCTATCAGTATGGGCAATGCAATTAGATTTCTCAAAAGTCGAATTGCCAAGCTACCTTTGACGATGTCCGAGTCAGAATCAAAAACCTCTCTTCAATCAGATGTTGAGCGTTTCATAAATGAGAAAATTCTACTTGCCGACAAGGTGATAGTCAAGCATGCTATCACAAAAATAAGAGATGGTGATGTTCTTCTTACTTATGGGTCTTCATCGGCAGTTGAAATGGTACTGTTACATGCATACGAGTTGGGTAAACAGTTTCGAGTTGTAGTGGTAGACTCTCGTCCAAGACTTAGAGGGAAACTTTTGCTTCGTAGGCTTTTGGAGAAGGGTCTTAGCTGTACATACACTCATATAAATGCTGTTTCCTACATAATGAAGGAAGTTACTCGAGTATTTCTGGGTGCTTCATCAGTGTTGTCTAATGGGACAGTTTATTCAGCAGTTGGGACTGCTTGTGTTGCAATGGTTGCCCATGCATTTCGTGTCCCTGTTTTAGTATGCTGTGAAGCTTATAAATTTCATGAAAGGGTGCAGCATGATTCCATATGCTCAAATGAGCTTGGTATGTAA 750 0.408 MEMYLSGDITGGNARCIAMLRAFQEAIKDYGVPSEKTLVRDLTARLSSYVSFLIECRPLSISMGNAIRFLKSRIAKLPLTMSESESKTSLQSDVERFINEKILLADKVIVKHAITKIRDGDVLLTYGSSSAVEMVLLHAYELGKQFRVVVVDSRPRLRGKLLLRRLLEKGLSCTYTHINAVSYIMKEVTRVFLGASSVLSNGTVYSAVGTACVAMVAHAFRVPVLVCCEAYKFHERVQHDSICSNELGM 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01138 249 Pfam Initiation factor 2 subunit family 9 247 IPR000649 GO:0044237
Vimu6g01138 249 SUPERFAMILY NagB/RpiA/CoA transferase-like 9 247 IPR037171 -
Vimu6g01138 249 Gene3D - 105 249 IPR042529 -
Vimu6g01138 249 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 3 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01138 Vimu-Chr6 11763221 11764929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01138 3 248 Eukaryotic Initiation Factors Gene Family AT5G38640 81.301 5.57e-152 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01138 K03680 - gmx:100785938 423.32