Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01110 CGGCATCATGAAGAAGTCTACCTCGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTTCTACTAACAACTTCAGCAGCAAAAACATACTAGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCTCTGATGGTACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGTAATGCTATTGGAGGAGAGATTCAATTTCAGACAGAAGTTGAAATGATCAGCTTGGCAGTAAACCAGTGCTGGACTGGGGCACTAGGAAGCACATTGCTTTGGGAGCAGCAAGAGGACTACTGTATCTTCATGAGCAATGTGATCCAAAGATCATTCACAGGGATGTGA 345 0.429 RHHEEVYLGNLKRFQFRELQISTNNFSSKNILGKGGFGNVYKGVLSDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVNQCWTGALGSTLLWEQQEDYCIFMSNVIQRSFTGM 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01110 114 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Vimu6g01110 114 SUPERFAMILY Protein kinase-like (PK-like) 7 76 IPR011009 -
Vimu6g01110 114 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Vimu6g01110 114 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 89 - -
Vimu6g01110 114 FunFam Somatic embryogenesis receptor kinase 1 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01110 Vimu-Chr6 11561023 11561691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01110 2 81 Receptor kinase-like Gene Family AT5G16000 82.500 1.29e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu6g01110 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01110 - - qsa:O6P43_009229 154.836