Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01109 ATGACTACTCTTTTGGATCACCAAGACTCACACGTCACAACTGCAGTGAGGGGCACAGTGGGGCACATTGCCCCAGAGTACCTTTCCACAGGACAGTCCTCTGAGAAGACTGATGTTTTTGGATTTGGCATTCTCCTCCTTGAATTGATCACAGGCCAGAGAGCTCTAGAGTTTGGAAAATCAGCCAACAACAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCTGGAGAAAAAGCTTGAAATGCTGGTAGACAAGGATCTGAAGAGCAACTATGACAGAATTGAACTTGAGGAAATGGTTCAAGTGGCCCTCTTGTGTACTCAGTATCTTCCAGGGCATAGGCCTAAGATGTCTGAAGTGGTTCGCATGCTTGAAGGTGATGGACTAGCAGAAAGATGGGAAGCTTCACAAAGAGTTGACACAACCAAGTTCAAACCGCAAGATTCCTCTTCATCAGATAGGTATTCTGATCTCACTGATGACTCTTTGTTGTTAGTCCAAGCCATGGAACTCTCAGGACCCAGATGA 534 0.4532 MTTLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANNKGAMLDWVKKIHLEKKLEMLVDKDLKSNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRVDTTKFKPQDSSSSDRYSDLTDDSLLLVQAMELSGPR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01109 177 Gene3D Transferase(Phosphotransferase) domain 1 1 146 - -
Vimu6g01109 177 MobiDBLite consensus disorder prediction 144 158 - -
Vimu6g01109 177 MobiDBLite consensus disorder prediction 138 158 - -
Vimu6g01109 177 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 137 - -
Vimu6g01109 177 FunFam Somatic embryogenesis receptor-like kinase 1 1 146 - -
Vimu6g01109 177 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01109 177 Pfam Protein tyrosine and serine/threonine kinase 7 126 IPR001245 GO:0004672|GO:0006468
Vimu6g01109 177 SUPERFAMILY Protein kinase-like (PK-like) 9 157 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01109 Vimu-Chr6 11560345 11561001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01109 1 177 Receptor kinase-like Gene Family AT5G16000 81.522 4.82e-99 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu6g01109 PK_Tyr_Ser-Thr 6.7e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01109 - - gmx:100798412 338.191