Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01107 ATGTTGGAGGGAGAAGCTGCTGGCACGTGGGCGCGCGCGTGCGACACGTGCCGCTCCGCAGCCTCCACCGTCTTCTGCGGCGCCCACAACGCCTACCTCTGCGCCTCCTGCGATGGCCGCGTGCACCACGCGTCCTCCACCTCTTGGCACGAGCGTGTGTGGGTCTGCGAGGCCTGCGAACGGGCCCCCGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTCTGCTCCTCATGCGACGCCGACATCCACTCCGCGAACCCTCTCGCAAGCCGCCACCACCGTGTCCCCATCCTCCCCATCGCTGCCGGCCACCACTCTCACGTCGAAATCGACGTCGCCGACGACGACGATGGTGCTGACGTGGATGACGAAGACGAAACCGCTTCCTGGCTCTTGCTCAACCCTGTCAAAACTGGCACTGTCCCTAACAGCAACAATAATGGGTTCTTGTACAGTGGTGAGGTTGACGAGTATTTGGACCTTGTTGATAACTGTAACTCTTGTGGTGACAACAACCACTTCGCTGCAACTACTACAACTGCCACTACTGCTGATCATTACGCTCAGCACCATCATTTTGATGGTGTTTCTCAGAAGAGTTATGCCGGGGACAGCGTGGTTCCGGTTCAGCAGCACCACCATTTTCAGCTTGGCTTGGAGTTTGAGAATTCTAAAGCTGCCTTCAGTTACAATGGTTCTATTAGTCAAAGTATTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCGATGAGGGATGTCTCAATTTCCCATACAAGACCCCCCAAAGGGACGATTGACCTATTTTCTGGACCTCCCATTCAGATGCCTTCCCACTTTTCTCCAATGGACAGAGAGGCCAGAGTCCTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAAACGATCAGGTATGCCTCGAGGAAAGCCTATGCAGAGACCAGACCCCGAATAAAGGGTCGTTTTGCCAAGAGAACAGATGTGGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATGACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1074 0.5363 MLEGEAAGTWARACDTCRSAASTVFCGAHNAYLCASCDGRVHHASSTSWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAAGHHSHVEIDVADDDDGADVDDEDETASWLLLNPVKTGTVPNSNNNGFLYSGEVDEYLDLVDNCNSCGDNNHFAATTTTATTADHYAQHHHFDGVSQKSYAGDSVVPVQQHHHFQLGLEFENSKAAFSYNGSISQSISVSSMDIGVVPESPMRDVSISHTRPPKGTIDLFSGPPIQMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLMTEVGYGIVPSF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01107 357 CDD Bbox1_BBX-like 13 55 - -
Vimu6g01107 357 Pfam CCT motif 288 330 IPR010402 GO:0005515
Vimu6g01107 357 CDD Bbox1_BBX-like 55 98 - -
Vimu6g01107 357 Pfam B-box zinc finger 53 98 IPR000315 GO:0008270
Vimu6g01107 357 ProSiteProfiles CCT domain profile. 288 330 IPR010402 GO:0005515
Vimu6g01107 357 ProSiteProfiles Zinc finger B-box type profile. 9 55 IPR000315 GO:0008270
Vimu6g01107 357 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Vimu6g01107 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 347 IPR045281 GO:0009909
Vimu6g01107 357 SMART bboxneu5 51 98 IPR000315 GO:0008270
Vimu6g01107 357 SMART bboxneu5 9 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01107 Vimu-Chr6 11543208 11545689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01107 1 357 C2C2-CO-like Transcription Factor Family AT3G02380 55.228 6.37e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu6g01107 zf-B_box 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01107 K12135 - gmx:100301886 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g00664 8 13381682 13383511 Vimu6g01107 6 11543208 11545689 PCT