Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01100 ATGCAGGCCAGGGAGATCACAGGACTGAATTATTTACTCCCTTCAGACCCTTGTCCTTACCCTGGTCACTACAGCATGACTCAGAACACCCTCCCCACATTTCAACTCCACAAACTCTCAAACCAGTTCTATGGTTTCCAAAACCCTCAGCAAATGGTTGCAGAATTCAGCCCCCCTCAGTCTTCATGCATCAGCAGCACCTCCACCTCTGATGAAGCAGATGAGCAGCAGCAAAGTCTCATCAATGAGAGGAAGCACAGGAGGATGATATCGAACCGTGAATCAGCACGCAGGTCACGCATGAGGAAGCAGAAACACCTTGATGAACTCTGGTCACAGGTGGTTTGGCTCAGGAATGAAAACCACCAGCTAATGGACAAGCTGAACCATGTGTCTGAGTCACATGACAGAGTTTCTCAAGAGAATGTTCAGCTCAGAGAAGAAGCCTCAGAACTTCGCCAAATGATATGTGACATGCAGCTACATAGTCCATACCATGCTCCTTCTCTGTGCCCCATTGATGATGATGTCTCTCCCTATGTCAAATCTGATTCCTCCATCACCAGCTCCTCGAACCTGCTTGGCTGA 588 0.4847 MQAREITGLNYLLPSDPCPYPGHYSMTQNTLPTFQLHKLSNQFYGFQNPQQMVAEFSPPQSSCISSTSTSDEADEQQQSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDRVSQENVQLREEASELRQMICDMQLHSPYHAPSLCPIDDDVSPYVKSDSSITSSSNLLG 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01100 195 MobiDBLite consensus disorder prediction 56 80 - -
Vimu6g01100 195 FunFam BZIP transcription factor 82 133 - -
Vimu6g01100 195 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 87 102 IPR004827 GO:0003700|GO:0006355
Vimu6g01100 195 Coils Coil 128 155 - -
Vimu6g01100 195 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 9 166 IPR044521 -
Vimu6g01100 195 SMART brlzneu 80 144 IPR004827 GO:0003700|GO:0006355
Vimu6g01100 195 SUPERFAMILY Leucine zipper domain 84 134 IPR046347 GO:0003700|GO:0006355
Vimu6g01100 195 CDD bZIP_plant_GBF1 85 136 IPR045314 GO:0003700|GO:0006355
Vimu6g01100 195 Pfam bZIP transcription factor 84 134 IPR004827 GO:0003700|GO:0006355
Vimu6g01100 195 Gene3D - 82 137 - -
Vimu6g01100 195 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 82 145 IPR004827 GO:0003700|GO:0006355
Vimu6g01100 195 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01100 Vimu-Chr6 11484718 11486474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01100 18 179 bZIP Transcription Factor Family AT3G30530 56.364 2.31e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu6g01100 bZIP_1 7e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01100 - - gmx:780548 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01100 6 11484718 11486474 Vimu6g01100 6 11484718 11486474 ECH
Vimu8g00673 8 13483775 13485559 Vimu6g01100 6 11484718 11486474 PCT