Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01080 ATGGTTGATCAAGGTGATTTAGTTGTCATCTGCGTCTCTATTGGAGTGGCCCTTGGGATTTTGATAGCTTGCTTGGTATATTTTGGCACAAGGTGGTACAATAAGCGAACTCATCTTAGCCGATCTGCGAATGAGCCTAGTTTAACAGCTATCCCTATACGAACAAATGGATTAGGAACGAGCACTGACTTCAGTGCTTCACTCACCAGTTCCGTAGCCACTTATAGGTCACCAAATCCTCCAAAAAAATCACATCCAACTGGGTGGAATCATCAGAATAGAGATGGCTTTGCTTCTGTATCAGGCATTCTGAAGTACTCCTACAAGGAAATTCAGAAGGCCACACAAAATTTCACAAATATTTTGGGAGAAGGGTCATTTGGCACAGTTTATAAAGCCGTGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTTCTAACGGAGGATTTGGGTCTAATTGCAAATAACTACTTTAGTACTAGGTGTTCTTACCTGAAAGAGCAGGAGTTGGACCAACAAAACCAGCTCCGGCACTGTCACAGGCCAAGGTCCACCTGTCCTGCCAGTTGTACTGCTCGGCTAACTCTGGTTTGCCGTGACAGAGTAGTACACAAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGGTACTGCGTAGATAAAGGACAGCTTATGCTTGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATACGATGAAGAAAAGGAATTGAGCTGGGATGAAAGGCTGCAAATTGCTGTTGATATTTCACACGGAGTAGAATACCTTCATGAAGGGGCAGTACCACATGTCGTACATCGTGATCTGAAATCTGCTAATATTCTGCTAGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGGCTCTCAAAGGAAGAGATCTTCGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGATCCAGCATACATTACCTCGAGCAAGTTCACGGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAGCTCATCACTGCCATCCATCCACATCAAAATTTGATGGAATATATCAACCTTGCTGCAATGGATTACGATGGTGTAGATGGGATTCTTGACAAGCAACTTGTGGGAAATTGCAACGTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCTAGGAAACGGCCATCTATAAGTGAGGTTTCGCAGGCTATATTGGGGATTAAGCAAAGGCGTCTAATGAAAGAAGACACCATGTCATTTGCAAGCACCAACTTCTCCCGAAGCGTGAGTCAAATAGATGAGCAACAGGTTGAATTAAGTAGTATAATTACCATGAACCACAGGGAAATAGGGTAA 1440 0.425 MVDQGDLVVICVSIGVALGILIACLVYFGTRWYNKRTHLSRSANEPSLTAIPIRTNGLGTSTDFSASLTSSVATYRSPNPPKKSHPTGWNHQNRDGFASVSGILKYSYKEIQKATQNFTNILGEGSFGTVYKAVMPTGEVVAVKMLAPNSKQGEKEFLTEDLGLIANNYFSTRCSYLKEQELDQQNQLRHCHRPRSTCPASCTARLTLVCRDRVVHKVLLLGRLHHRNLVNLLGYCVDKGQLMLVYEFMSNGSLENLLYDEEKELSWDERLQIAVDISHGVEYLHEGAVPHVVHRDLKSANILLDHSMRAKVSDFGLSKEEIFDGRNSGLKGTYGYMDPAYITSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGNCNVEEVRQLAKIAHKCLHKSPRKRPSISEVSQAILGIKQRRLMKEDTMSFASTNFSRSVSQIDEQQVELSSIITMNHREIG 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01080 479 SMART serkin_6 116 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01080 479 SUPERFAMILY Protein kinase-like (PK-like) 98 431 IPR011009 -
Vimu6g01080 479 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Vimu6g01080 479 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 249 456 - -
Vimu6g01080 479 Gene3D Phosphorylase Kinase; domain 1 90 167 - -
Vimu6g01080 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Vimu6g01080 479 Pfam Protein tyrosine and serine/threonine kinase 214 430 IPR001245 GO:0004672|GO:0006468
Vimu6g01080 479 Gene3D Phosphorylase Kinase; domain 1 207 249 - -
Vimu6g01080 479 Gene3D Transferase(Phosphotransferase) domain 1 250 457 - -
Vimu6g01080 479 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 160 - -
Vimu6g01080 479 ProSiteProfiles Protein kinase domain profile. 116 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01080 Vimu-Chr6 11370796 11375784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01080 106 436 Receptor kinase-like Gene Family AT1G79680 34.682 6.71e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vimu6g01080 PK_Tyr_Ser-Thr 4.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01080 - - cpap:110820195 563.533