Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01060 ATGGGTTCAGTTTGTTGCTGTTTTAATGTTAATGACGTTGAAGATTATTTGAATCCAAATAGTCCTGTATACAGGAACTGTATGTGTTTCGGTTGTTTCATACAGTACTTTTTGACTGTGTATACCTCGATATTCCGTAGAGGGGAAGTGCATGCGGTTCCTTCATCTATACAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATTTATCGTTCTCCTCCAAGGCCATTGCCTTATGATGCGGATCCCAGGTTTTTCCGTTCACAGCGCGATGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTGAGAGGTGATGGAGATGCTGACTCAGAATCTTTAAATTTAGGTGGCAAATGGAATGATATCAGTGAAGATGGATCAAAGGAATACCGTAAGTCCACCGTGAGACTTTCATCAGCAAAGCTTACAACTGGAGATGGGGTTATCTATTCATCATCGGAAGAGGAGGATTGCTGTCCGACTTGTCTAGAAGAATACACTGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATATATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAG 651 0.4178 MGSVCCCFNVNDVEDYLNPNSPVYRNCMCFGCFIQYFLTVYTSIFRRGEVHAVPSSIQGAASMTSTASLDNSLSDIYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDGDADSESLNLGGKWNDISEDGSKEYRKSTVRLSSAKLTTGDGVIYSSSEEEDCCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01060 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 217 IPR013083 -
Vimu6g01060 217 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Vimu6g01060 217 MobiDBLite consensus disorder prediction 99 134 - -
Vimu6g01060 217 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 58 217 - -
Vimu6g01060 217 MobiDBLite consensus disorder prediction 99 123 - -
Vimu6g01060 217 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Vimu6g01060 217 SMART ring_2 175 215 IPR001841 -
Vimu6g01060 217 CDD RING-H2_AIRP1-like 171 217 - -
Vimu6g01060 217 SUPERFAMILY RING/U-box 170 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01060 Vimu-Chr6 11265542 11267338 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01060 1 217 C3H Transcription Factor Family AT5G15790 58.482 1.03e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01060 - - gmx:100788192 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01060 6 11265542 11267338 Vimu6g01060 6 11265542 11267338 ECH