Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01058 ATGTTTCTGAAATGTTTTGGTGAGTCAAGTTCATCCGGAAGACAATATCCAACAGTAATAGAAGAGTTGTGTCGTCATTTTTCTCTTGCTGATATTCAGAAATCAACCAACAATTTTGATCATAACAGACTAATTGCACGAGGATGGGTTAAAGTATACAAAGGTTGTCTCCAGCATATTGATGGTTCTGATTACCCAGTCACAGTGAGGCGATTTAATGTGGAAGACCGTGAAATGTTCAAAAGAGAAATAGAGTTACTGTGTCAGCTTCATCACCCAAATTGTGTGTCTATTATAGGATTTTGCAACCACAAAAAAGAGAAGATCACTGTGCACGAATACAATAGGTCTCTACTTTACTACCTCCTAGATGAGGTTAGGGAAGCACTGCCATGGAAGAAAAGGATAGAGATTTGCATAGGGGCAGCGCGTGGACTACACTACCTTCATGCCGGACTCAAGCGCACCATCATTCACCGCAACATCAATTATGCCAGCATTCTTTTGGATGACAACATGCACCCAAAACTCTCAAAGTACATAAAGGATGGTACTGTCACACATAAATGTGATGTTTACGCATTTGGTATTGTTTTGCTAGAAGTTGTAACGGGAATAAGATTTTTTCCAATACCAAAAGAACTTAAGGGGAAGTGTGTTGAGGAGAATATTGATCCGAAAATCAAAGGAAAGATTGCACCAGAGTGTTGGCAAGTGTTTATAGACATAGCCTTGAGATGCATAAAAGATGACCCTGACGAACGACCAGAAATGGGTGAAGTGGAGGTGCAACTTGAGCTTGCTCTGTTGTTGCAGGAACAAGCAGATGTCACAAATTTCGATACTGATTATACCTTATTCTTCAAAACTATTATTATCCCAAAATCAGAGGGGAATTTTCAGTATGTCATTGGCCTAACAAAACAGGAAACCGTACGCAGTGACAAGGAGGGAAAAGTTGTTAGGCAGAAAAGCCACGTGGCGACTGCTCCACAAGCTGAGGCCATTAGGAAAAGGCACCGAAGAGAAAATATTTTTTGGAAGGACTTGGTGCAGTTCTGCATTACCATGGATATGAAGAACGCTTATTTTTAG 1095 0.4046 MFLKCFGESSSSGRQYPTVIEELCRHFSLADIQKSTNNFDHNRLIARGWVKVYKGCLQHIDGSDYPVTVRRFNVEDREMFKREIELLCQLHHPNCVSIIGFCNHKKEKITVHEYNRSLLYYLLDEVREALPWKKRIEICIGAARGLHYLHAGLKRTIIHRNINYASILLDDNMHPKLSKYIKDGTVTHKCDVYAFGIVLLEVVTGIRFFPIPKELKGKCVEENIDPKIKGKIAPECWQVFIDIALRCIKDDPDERPEMGEVEVQLELALLLQEQADVTNFDTDYTLFFKTIIIPKSEGNFQYVIGLTKQETVRSDKEGKVVRQKSHVATAPQAEAIRKRHRRENIFWKDLVQFCITMDMKNAYF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01058 364 Gene3D Phosphorylase Kinase; domain 1 7 114 - -
Vimu6g01058 364 Pfam Protein tyrosine and serine/threonine kinase 181 264 IPR001245 GO:0004672|GO:0006468
Vimu6g01058 364 Pfam Protein tyrosine and serine/threonine kinase 50 178 IPR001245 GO:0004672|GO:0006468
Vimu6g01058 364 SUPERFAMILY Protein kinase-like (PK-like) 14 270 IPR011009 -
Vimu6g01058 364 PANTHER OS07G0166700 PROTEIN 179 272 IPR045272 GO:0004714|GO:0006468
Vimu6g01058 364 FunFam Receptor-like protein kinase ANXUR2 5 114 - -
Vimu6g01058 364 Gene3D Transferase(Phosphotransferase) domain 1 115 179 - -
Vimu6g01058 364 Gene3D Transferase(Phosphotransferase) domain 1 180 275 - -
Vimu6g01058 364 ProSiteProfiles Protein kinase domain profile. 39 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01058 Vimu-Chr6 11247049 11253869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01058 8 276 Receptor kinase-like Gene Family AT3G51550 36.278 1.01e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01058 PK_Tyr_Ser-Thr 3.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01058 - - var:108327132 636.336