Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01056 ATGGGATCAGTTTGTTGCTGTTTTAATGTTGATGATTTTGAAGATTATATGAATCCAAATAGTCCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCCTACAGAACGTTTTGACTGTGAAAAGAGGCAGGCCTGATCCGGTTGGAAGAGAGAAAGAATGCCACTGGCTCAGATACAGGTCTGATTGCATGTATGCATCAATATTCCGTAGAGGGGAAGCGCATGCAATTCCTTCATCTTTACAGGGCACAGCATCTATGGCTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCCTTGCCTTATGATTCAGACCCCAGGTTTTTCCGTTCACAGCGAGATGGATTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCGGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAGTTTGGGTGGTAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATATCGTAAGTCCTCTGTGAGACTTTCATCAGCAAAACTTACGACTGGAGCTGGGGTTGTCTATTCATCGTCGGAAGTGGAGGATGTCTGTCCAACGTGTCTTGAAGAATACACTGAAGAGAATCCAAAGATATTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAATTGTCCTGTTTGTGGGAAGTTCCAGAACAAACTGTTGAACAGGTCCAGTTCTTCCCGTTCAAATGAGCTTGTGTGCCAACATATTGCTGAAGGGAAAAAGTTTAGGATTCAAAAACGATCTAATTGGCATGGTAGCTTGGCAAACATCAGGCTACCAAATATCAAGATTCTTGTTGAGAATATT 888 0.4178 MGSVCCCFNVDDFEDYMNPNSPVYRNCMCLSCFLQNVLTVKRGRPDPVGREKECHWLRYRSDCMYASIFRRGEAHAIPSSLQGTASMASTASLDNSLSDMYRSPPRPLPYDSDPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDVDADSESLSLGGKWNDTSEDGSKEYRKSSVRLSSAKLTTGAGVVYSSSEVEDVCPTCLEEYTEENPKILTKCSHHFHLGCIYEWMERSDNCPVCGKFQNKLLNRSSSSRSNELVCQHIAEGKKFRIQKRSNWHGSLANIRLPNIKILVENI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01056 296 MobiDBLite consensus disorder prediction 96 173 - -
Vimu6g01056 296 FunFam E3 ubiquitin-protein ligase At3g02290-like 176 245 - -
Vimu6g01056 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 244 IPR013083 -
Vimu6g01056 296 ProSiteProfiles Zinc finger RING-type profile. 199 239 IPR001841 -
Vimu6g01056 296 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 81 241 - -
Vimu6g01056 296 Pfam RING-H2 zinc finger domain 193 239 IPR024766 GO:0008270
Vimu6g01056 296 SUPERFAMILY RING/U-box 195 245 - -
Vimu6g01056 296 CDD RING-H2_AIRP1-like 196 241 - -
Vimu6g01056 296 SMART ring_2 199 239 IPR001841 -
Vimu6g01056 296 MobiDBLite consensus disorder prediction 115 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01056 Vimu-Chr6 11230829 11235077 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01056 1 241 C3H Transcription Factor Family AT5G15790 54.435 4.30e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01056 - - gmx:100788192 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01056 6 11230829 11235077 Vimu6g01056 6 11230829 11235077 ECH