Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01053 ATGGAAGATGTCTTGGAACGTTACGAGAGATATACTCATACAGCACTCACTGGAACCAACAATGACTCGCAGGGCAACTGGTCTTTCGAATATATCAAGCTCACCGCAAAAGTTGAAGTCTTGGAGAGGAACGTAAGTTTGAAAGAGCTTCAAAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCAGAACAAGAAAGGCAAGGACATTACAGGAGCAAAACAGCAAGCTAGCAAAGATGAAAGAGAAAGGGAAGACATTGACTGAACGTCCACAGAGCGTACCAGAAACTCTTGGCCAAAATTCAACCAATCTCAACTTAGCTTCTCCACAGCTATTACCACCACAAAGACTTGTTCCTTCTTTAACTCTCAGTGGGCCATTGCAAGGAAGAGCAACGATGGAAGAAATGGGTGAAGCTCAAACAGTGCCAACGGGCCATTCACTCATCCCACCATGGATGCTGCATATCTGA 480 0.4521 MEDVLERYERYTHTALTGTNNDSQGNWSFEYIKLTAKVEVLERNVSLKELQSLEQQLDTSLKRIRTRKARTLQEQNSKLAKMKEKGKTLTERPQSVPETLGQNSTNLNLASPQLLPPQRLVPSLTLSGPLQGRATMEEMGEAQTVPTGHSLIPPWMLHI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01053 159 Coils Coil 72 92 - -
Vimu6g01053 159 MobiDBLite consensus disorder prediction 81 114 - -
Vimu6g01053 159 Pfam K-box region 22 84 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu6g01053 159 MobiDBLite consensus disorder prediction 92 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01053 Vimu-Chr6 11211736 11218228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01053 1 157 MADS-box Gene Family AT5G60910 37.430 2.09e-21 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01053 K09264 - gmx:100786580 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01053 6 11211736 11218228 Vimu6g01053 6 11211736 11218228 ECH
Vimu11g01901 11 28211783 28219440 Vimu6g01053 6 11211736 11218228 ECH
Vimu6g01053 6 11211736 11218228 Vimu8g00703 8 13877322 13889397 PCT