Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01050 GGCCCGCTACGATATGGTATAAAAGTGAAGCATATATGTGTAATAGAAATCGCAGATGTATACGTAGGATCGTGTGAAATAATGGTAGCTATGATGGGTTGCCTGGCTACAGAAAAAGGGTGGAAGAAAGGCCCTTGGACTGGTGAAGAAGACAAGCTGCTAAGTGAATATGTTAGCTTGTATGGGGAAGGTAGGTGGAGTTCAGTGGCAAAGTTTACAGGATTAAATAGGAGTGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAAGCCTGGTCTGAAGAAAGGTCAATTAACACCTTTGGAAGAAGGAACGATTATGGAACTACATGCAATTTTGGGTAACAAGTGGTCTACGATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACGCACTTCGGGAAGAGGGAGAAATCCAAACAGAAGAAGCCACAAAGGCGACAGAAGGAACAACAACAACAACCTGAGAAGTGTGATTTCAAAAGCATCATGTGCCACAAGGATACCATGAACGGAACAAAATCGTTTGAGACACAAAATAGTAAGCTACAAGAAATTGGTTTGATGAACCCAACAATAGATGACCAATACAATAATACCGTTCCTTCCATGCACGAGGGTTTCTCGTCCACGTGGCCGGACACTTTGGTGGATGATGGCTTATGGTTTGGTTTATGGGACTTTGATGAACCACTGATGAATTTTGCAGATTATGTTAACCAGTTTAGCAAATGTGTCATGCCAAATGAAGGCACATTTTCTGCTGGAGAGGATTCCACGCAAAGTCATGTTCAAACTTCTTGTTTTGATGATATATTTGGATGA 849 0.4158 GPLRYGIKVKHICVIEIADVYVGSCEIMVAMMGCLATEKGWKKGPWTGEEDKLLSEYVSLYGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPLEEGTIMELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKSKQKKPQRRQKEQQQQPEKCDFKSIMCHKDTMNGTKSFETQNSKLQEIGLMNPTIDDQYNNTVPSMHEGFSSTWPDTLVDDGLWFGLWDFDEPLMNFADYVNQFSKCVMPNEGTFSAGEDSTQSHVQTSCFDDIFG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01050 282 Gene3D - 99 170 - -
Vimu6g01050 282 FunFam Myb transcription factor 43 95 - -
Vimu6g01050 282 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Vimu6g01050 282 Pfam Myb-like DNA-binding domain 97 140 IPR001005 -
Vimu6g01050 282 Gene3D - 42 95 - -
Vimu6g01050 282 SUPERFAMILY Homeodomain-like 40 137 IPR009057 -
Vimu6g01050 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 94 IPR017930 -
Vimu6g01050 282 SMART sant 42 92 IPR001005 -
Vimu6g01050 282 SMART sant 95 143 IPR001005 -
Vimu6g01050 282 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Vimu6g01050 282 CDD SANT 100 141 IPR001005 -
Vimu6g01050 282 MobiDBLite consensus disorder prediction 152 166 - -
Vimu6g01050 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 145 IPR017930 -
Vimu6g01050 282 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 40 245 - -
Vimu6g01050 282 MobiDBLite consensus disorder prediction 141 166 - -
Vimu6g01050 282 CDD SANT 45 90 IPR001005 -
Vimu6g01050 282 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01050 Vimu-Chr6 11188484 11189532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01050 40 238 MYB Transcription Factor Family AT3G30210 52.582 3.23e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g01050 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01050 K09422 - gmx:100785540 358.992