Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01048 ATGTTTATGAAATGTCTAGGCAACACAAGTTCTTCAAAGAAACAGTATCAAACAGTAATAGAAGAATTGTGCCATCAGTTTTCTCTTGCAGAGATTAGAAAGTCAACCAACAACTTCGATAGAAAGAGACTAATTGGTCGTGGAGGATTTGGTGAAGTATATAAAGGATATCTCCAACATTATGCTGTTTCTAATTACATAGTAGCAGTGAAACGGTTTTCTGTGGAACACAGTGAAGTGTTCAAGAATGAAATAGAGTTGCTCTGCCAGCTTCGTCACCCTAATTGTGTCTCTCTTATAGGATTCTGCAACCACAAGAAAGAGAAGATTGTTGTGTACGAGTACATGTCAAATGAATCTCTAGATCGACACCTACAACGTGGGGAACTGTCATGGAAGCAAAGGTTGGAAATTTGCACAGGAGCAGCGCGTGGACTACACTACCTTCATGCAGGAGCTAAGCGCACCATCATCCACCGTATTGTCAAACCTCGAACCATCCTTTTGGACGACAACATGCACCCAAAACTCACAGGTTTCTGCATTAGCGTAAAGGGGTCACGATTGATGTCAAAACCGAAGCCAATTAAAGTTGATGTTGTGGCTGGTACTCCTGGATACATGGCTAGAGAGCTTTTCACCGACGATGCCATCACAGATAAATCTGATGTTTATTCTTTTGGTATGGTTCTGCTAGAGGTTGTGTGTGGAAGGAAATACATAAGAACGCCAGCTGAAAGAGAATTTCTGGAGAAGCCTGTTGAGGAAAAAGTTGATGCCAGCATCAAGGGAAAGATTGCACCAAAGTGTTGGGAAGTCTTCATAGATATTACCAAAAGATGCGTGATGTATGAACCAGATGAGCGACCAACAATGGGTGAAGTAGAGGTACAACTAGAGTATGCTTTGTCGTTGCAGGAACAAGCTGATATCATAAATACTAATGGTGATTATACCTTATTTTCCACCACAGTTATTCACCCAGGAGCGGAACTGATAGACAGCACAGAAGACAGTGATACTGAAGAAATGTTCCTCCAGTTTCTTCAAGCAGTCAAAGATCTGTCTCAAATTGGAACTATGTTTCTCAGTTGTTTGGGTATGTGCTGTTGGAAGCCCACATCGAATACAGACTCATCTCTGAGACAGTTTTCAACGGTGATACAAGAGCTGTGTCATCAATTTTCTCTCGCCGATCTAAGAAAAGCCACCAATAACTTCGATCTAAACAGAGTAATCGGAAATGGAATGTTCAGTGAAGTATATAAAGGCTATCTACAGCATAATGGTGCCTCTGATTACACGGTCGCAATAAAGCGATTTAACGATCAAGGATGGGAAGCGTTTAACAAGGAAATAGAATTGTTATGCCAGCTTCGTCACCCCAGATATAAACACCTGCAAGATGCTGAACTATCATGGAAGAAGAGGCTAGAGATATGTATAGGAGTAGCAAGTGGACTACACTACCTTCACACTGGAGCCAAGCGTTCTATCTTTCACTGTACACTCGGTCCTAGTAACATCCTTTTGGATGACCACATGGAGCCAAAACTCGCTGGTTTTGGTGTTAGCGTGCAGGGATCACGCTTTAAGTCAAAGCAGAAACAAGTCAATGTAGAGCATGCTATAGGTTCTTGGATCTACATGGCCACAGAGTATGTGATGGACGGTACCATCACAGATAAATGGGATGTTTTCTCCTTTGGTTTGGTTCTACTAGTAGTGGTGTGCAGGAGGACGTATTATTTAATAACCCTCTCTGAAAAAGAACTTCTGGAGAATCCTGTTGAGGAGAAAATTGATCCTATTATCAAAGGAAAGATTGCACCAGATTGTTGGCAAGTGTTTGTAGATGTCATGATGAATTGCTTGAAGTATGAAGCAGATGAGCGACCTACAATGGGTGAAATAGAGGCCCCAGTCTTTGAACTAGAGCAAACAGTATCTGAGATGAATGCTTGGAAAGCCACCGATAACTTTGATTTAAACAGAGTAATAGGACGTGGATTATTTAGTGAAGTATATAAAGGCTGTTTACAGCATAATGGTGCTTCTGATTACAAGGTCGCGATAAAGCGATTTAATGATCAAGGATGGGAAGCGTTCAACAAGGAAATAGAATTGTTATGTCAGCTTCATCACCCCAGATGTGTGTCTCTTATAGGATTCTGCAACCACGAAAATGAGAAGATTCTTGTATACGAGTTCATGTCCAATGGATCTCTAAAGGAACAACTACAAGATGGTAAACTATCATGGAAGAAGAGGCTAGAAATATGCATAGGAGTAGCACGTGGACTGCACTACATTCACACCGGAGCTAAACGTACCATCTTTCACTGCATCCTAAGTCCTGGTACCATCCTTTTGGATGACCACATGGAGCCAAAACTCTCTGGTTTCGGTGTTAGCCTGCAGGGATCACGTTTTATGTCAAAGCAGAAGCAAATCAGTGTAGAGCATGTTATGGGTACTTGGGGCTTCATGGCTACGCAGTTTGTCAGGGATGGTACCATCACAGCTAAATGGGATGTTTTCATATTTGGTTTGGTTCTACTCGATGTTGTGTGCAGGAGGATGTCAATAACCCTGGCTGAAAAAGAATTTCTGGAGAATCCTATTGAGGAGAAAATTCATCCGATTCTCAAAGGAAAGATTGCTCCAGATTGTTGGCAAGTCTTTGGTGACGTCGTGGTAAATTGCTTGAAGTATGAACCAGATGAGCGACCTACAATGGGTGAAGTAGAGGTGCAACTTGAGCACGCTCTATCGATGCAGGAACGAGCAGATATCACAAACTCCAACTGTGATTATACCTTATTGTCCAAAACCATTATTCCCCTCGGAAACAGTACGTGA 2862 0.4193 MFMKCLGNTSSSKKQYQTVIEELCHQFSLAEIRKSTNNFDRKRLIGRGGFGEVYKGYLQHYAVSNYIVAVKRFSVEHSEVFKNEIELLCQLRHPNCVSLIGFCNHKKEKIVVYEYMSNESLDRHLQRGELSWKQRLEICTGAARGLHYLHAGAKRTIIHRIVKPRTILLDDNMHPKLTGFCISVKGSRLMSKPKPIKVDVVAGTPGYMARELFTDDAITDKSDVYSFGMVLLEVVCGRKYIRTPAEREFLEKPVEEKVDASIKGKIAPKCWEVFIDITKRCVMYEPDERPTMGEVEVQLEYALSLQEQADIINTNGDYTLFSTTVIHPGAELIDSTEDSDTEEMFLQFLQAVKDLSQIGTMFLSCLGMCCWKPTSNTDSSLRQFSTVIQELCHQFSLADLRKATNNFDLNRVIGNGMFSEVYKGYLQHNGASDYTVAIKRFNDQGWEAFNKEIELLCQLRHPRYKHLQDAELSWKKRLEICIGVASGLHYLHTGAKRSIFHCTLGPSNILLDDHMEPKLAGFGVSVQGSRFKSKQKQVNVEHAIGSWIYMATEYVMDGTITDKWDVFSFGLVLLVVVCRRTYYLITLSEKELLENPVEEKIDPIIKGKIAPDCWQVFVDVMMNCLKYEADERPTMGEIEAPVFELEQTVSEMNAWKATDNFDLNRVIGRGLFSEVYKGCLQHNGASDYKVAIKRFNDQGWEAFNKEIELLCQLHHPRCVSLIGFCNHENEKILVYEFMSNGSLKEQLQDGKLSWKKRLEICIGVARGLHYIHTGAKRTIFHCILSPGTILLDDHMEPKLSGFGVSLQGSRFMSKQKQISVEHVMGTWGFMATQFVRDGTITAKWDVFIFGLVLLDVVCRRMSITLAEKEFLENPIEEKIHPILKGKIAPDCWQVFGDVVVNCLKYEPDERPTMGEVEVQLEHALSMQERADITNSNCDYTLLSKTIIPLGNST 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01048 953 SUPERFAMILY Protein kinase-like (PK-like) 12 299 IPR011009 -
Vimu6g01048 953 Pfam Protein tyrosine and serine/threonine kinase 42 298 IPR001245 GO:0004672|GO:0006468
Vimu6g01048 953 Pfam Protein tyrosine and serine/threonine kinase 469 639 IPR001245 GO:0004672|GO:0006468
Vimu6g01048 953 Pfam Protein tyrosine and serine/threonine kinase 663 919 IPR001245 GO:0004672|GO:0006468
Vimu6g01048 953 Pfam Protein tyrosine and serine/threonine kinase 409 463 IPR001245 GO:0004672|GO:0006468
Vimu6g01048 953 Gene3D Phosphorylase Kinase; domain 1 370 463 - -
Vimu6g01048 953 Gene3D Phosphorylase Kinase; domain 1 3 115 - -
Vimu6g01048 953 ProSiteProfiles Protein kinase domain profile. 407 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01048 953 SUPERFAMILY Protein kinase-like (PK-like) 650 920 IPR011009 -
Vimu6g01048 953 SUPERFAMILY Protein kinase-like (PK-like) 387 640 IPR011009 -
Vimu6g01048 953 FunFam Receptor-like protein kinase ANXUR2 738 942 - -
Vimu6g01048 953 PANTHER OS07G0166700 PROTEIN 392 462 IPR045272 GO:0004714|GO:0006468
Vimu6g01048 953 ProSitePatterns Protein kinases ATP-binding region signature. 45 71 IPR017441 GO:0005524
Vimu6g01048 953 ProSiteProfiles Protein kinase domain profile. 661 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01048 953 Gene3D Phosphorylase Kinase; domain 1 667 738 - -
Vimu6g01048 953 FunFam Receptor-like protein kinase ANXUR2 116 321 - -
Vimu6g01048 953 ProSitePatterns Protein kinases ATP-binding region signature. 667 693 IPR017441 GO:0005524
Vimu6g01048 953 ProSiteProfiles Protein kinase domain profile. 39 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01048 953 ProSitePatterns Protein kinases ATP-binding region signature. 413 439 IPR017441 GO:0005524
Vimu6g01048 953 FunFam Receptor-like protein kinase ANXUR2 5 115 - -
Vimu6g01048 953 Gene3D Transferase(Phosphotransferase) domain 1 464 665 - -
Vimu6g01048 953 Gene3D Transferase(Phosphotransferase) domain 1 116 320 - -
Vimu6g01048 953 Gene3D Transferase(Phosphotransferase) domain 1 739 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01048 Vimu-Chr6 11149480 11156735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01048 657 931 Receptor kinase-like Gene Family AT3G51550 40.956 4.59e-57 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01048 PK_Tyr_Ser-Thr 3.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01048 - - adu:107486597 506.523