Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01042 ATGGTGAGGCTAAGCCATCAGAGAAGAAATGGTCCTTCAAACACAACGTCAGTGGCCGTTGCTTTAAGAAATGGGAAGTTCAAAAGGAAATCTCACGGCTCAGACAATGATAGAAATATAAATGTTAAGGGAATGAGGCTGGTCATATCAGCTGCATGTGTTCTAGTGCTATTCTCTTGTGCAGCTGCGTATGATCCTTTGGATCCAAATGGAAACGTAACGATCAAATGGGATGTTGTGTCTTGGACACCAGATGGCTATGTAGCAGTGGTAACGATGAGCAATTTCCAAATGTTTCGGCACATCATGAATCCGGGATGGACCTTGTCGTGGACGTGGGCAAAGAAGGAAGTAATATGGTCCATGGTAGGAGCTCAAACAACAGAGCAAGGAGACTGCTCTAAGTTCAAAGGCAATGTACCTCACTGCTGCAAGAAAACTCCCACAGTTGTAGACTTGCTCCCTGGTGTACCTTACAATCAACAATTCTCAAACTGTTGTAAGGGTGGAGTGGTGGCAGCATGGGGTCAAGACCCTTCAGCAGCAGTTTCATCCTTCCAAGTCAGTATTGGGTTAGCCGGCACTTCAAACAAGACTGTTAAACTTCCCAAGAACTTCACTCTCTTGGGTCCAGGACCAGGCTACACTTGTGGTCCTGCCAAGGTTGTTCCTTCCACCGTTTTCCTTACACCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACTTGCACATACTCACAATTTCTGGCAAGAAAGAACCCAGGTTGCTGTGTATCTTTGTCATCCTTTTACAACGAGACCATTACCCCTTGTCCCTCCTGTGCATGTGGATGCCAGAACAGGAGGAACTGTGTCAAGAGTGACTCTAAACGTATCAACATGGTGGGGATTCACACTCCAAAGAAAGACAATGAACCATTGCTACAGTGCACTCATCATATGTGCCCAATAAGAGTACACTGGCACGTGAAGCTCAACTACAAGGACTATTGGAGAGTCAAGGTTGCGGTAACAAATTTCAACTATAGGATGAACTACTCCCTCTGGACTCTTGCTGTTCAGCATCCAAATCTTAACAATGTCACCCAAGTTTTCAGCTTTGATTATAAGCCTCTACTTCCATACGAGTCCATAAATGATACTGGTATGTTCTTCGGAATGAAATACTTTAACGATCTATTGATGGAAGCTGGACCGACTGGGAATGTTCAATCAGAAATTCTTCTTCAGAAAGATAAGGATACATTCACACTCAAGCAGGGGTGGGCATTTCCTCGCAAGGTCTACTTTAATGGCGAAGAATGCATGCTGCCACCGCCGGATACCTACCCGATCCTTCCTAACTCTGCCCCTGTGAACCTATTCAACTTCCCAAAATTCATATTCACAATGCTTGTCATGCTAGCTGTTTTGTGA 1428 0.4489 MVRLSHQRRNGPSNTTSVAVALRNGKFKRKSHGSDNDRNINVKGMRLVISAACVLVLFSCAAAYDPLDPNGNVTIKWDVVSWTPDGYVAVVTMSNFQMFRHIMNPGWTLSWTWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSAAVSSFQVSIGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDKRRKTQALMTWNVTCTYSQFLARKNPGCCVSLSSFYNETITPCPSCACGCQNRRNCVKSDSKRINMVGIHTPKKDNEPLLQCTHHMCPIRVHWHVKLNYKDYWRVKVAVTNFNYRMNYSLWTLAVQHPNLNNVTQVFSFDYKPLLPYESINDTGMFFGMKYFNDLLMEAGPTGNVQSEILLQKDKDTFTLKQGWAFPRKVYFNGEECMLPPPDTYPILPNSAPVNLFNFPKFIFTMLVMLAVL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01042 475 PANTHER PROTEIN COBRA 52 468 IPR006918 GO:0010215|GO:0016020
Vimu6g01042 475 PIRSF COBRA 38 475 IPR006918 GO:0010215|GO:0016020
Vimu6g01042 475 Pfam COBRA-like protein 87 250 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01042 Vimu-Chr6 11104188 11106500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01042 45 475 COBRA Gene Family AT3G29810 63.182 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01042 - - gmx:100784352 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01042 6 11104188 11106500 Vimu8g00722 8 14100108 14101609 PCT