Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01041 ATGGATATTCAGAAGTTCAACATTTACTTTGTTTTCTTTCCTTTCCTTTTAATTGCTTTCCTCTTGCTGTTGGATGTTTATCTTTCAGATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGTTGGACCCCTGATGGATATGTAGCTGTTGTTACAATGAACAACTTCCAACAATATCGTCATATTGCTTCACCTGGCTGGTCACTAGGATGGACATGGGCAAAAAAGGAGGTAATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGAGATTGTTCAAAATTTAAGGGAGGTATTCCACATTGTTGTAAGAAGGATCCGACCGTTGTGGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGCTGCAAAGGTGGGGTACTCAGTTCTTGGGTGCAGGATCCTACCAATGCAGTTTCATCATTTCAAGTTAGTGTTGGTAGAGCTGGTACCACAAACAAAACTGTCAAAGTCCCAAAAAACTTTACCCTGCATGCACCAGGACCAGGTTATACTTGTGGTCCAGCCAAGATTGTGAGACCCACCCAATTCATCCAAGCAGACAAAAGGAGAGTGACCCAAGCACTGATGACATGGAATGTGACATGCACATACTCACAATTTCTAGCTCAGAAAACTCCCTCTTGCTGTGTCTCACTTTCATCTTTCTATAATGATACTATTGTGCCGTGCCCAACATGTGCATGTGGTTGCCAGGGTAACTCATCTCTGTCAGGAAGCTGTGTGAATCCAAATACCCCACATTTGGCATCGGTTGTTTCTGGCTCTGGGAAGAATAACTTTTCACCTTTGGTTCAGTGTACCAGTCATATGTGTCCAGTCCGAATCCACTGGCATGTTAAGCTAAACTACAAGGAGTACTGGCGTGTAAAAGTTACTATTACTAATTTTAATTACAGGATGAACTATTCTGAGTGGAACATGGTTGTTCAACATCCAAACTTTGACAATTTGACTCAACTATTCAGTTTCAACTACAAGTCATTGACCCCTTACGGTACAATAAATGACACAGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTCAACCAAGCTGGCCCTAATGGCAATGTTCAATCCGAGCTACTCTTCCGAAAGGATAAAGCAACTTTTACTTTTGATAAGGGATGGGCTTTTCCTCGAAGGATCTACTTCAACGGTGACAACTGTGTCATGCCACCACCTGATGCTTATCCGTGGTTACCTAATGCTGGTTCTCGGCAAAAGGTTTCCTTGTTTGCCTTAGTGATAGCTTCTTTGGTAGCCTTGGTATTTTATGCCCACGCATAA 1353 0.4191 MDIQKFNIYFVFFPFLLIAFLLLLDVYLSDAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIASPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKFKGGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWVQDPTNAVSSFQVSVGRAGTTNKTVKVPKNFTLHAPGPGYTCGPAKIVRPTQFIQADKRRVTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVPCPTCACGCQGNSSLSGSCVNPNTPHLASVVSGSGKNNFSPLVQCTSHMCPVRIHWHVKLNYKEYWRVKVTITNFNYRMNYSEWNMVVQHPNFDNLTQLFSFNYKSLTPYGTINDTAMLWGVKFYNDFLNQAGPNGNVQSELLFRKDKATFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSRQKVSLFALVIASLVALVFYAHA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01041 450 PIRSF COBRA 4 450 IPR006918 GO:0010215|GO:0016020
Vimu6g01041 450 PANTHER PROTEIN COBRA 20 439 IPR006918 GO:0010215|GO:0016020
Vimu6g01041 450 Pfam COBRA-like protein 55 218 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01041 Vimu-Chr6 11101253 11103511 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01041 11 445 COBRA Gene Family AT3G02210 75.171 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01041 - - gmx:100783820 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01041 6 11101253 11103511 Vimu6g01041 6 11101253 11103511 ECH
Vimu8g00722 8 14100108 14101609 Vimu6g01041 6 11101253 11103511 PCT
Vimu6g01041 6 11101253 11103511 Vimu8g00723 8 14102595 14107169 PCT