Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01038 ATGAATTTCTCCCAATTCTACAGGCTAGATAAAACTAGGTTCTATGTCGTAGGAGCTGGGCTCTTTACAGGTGTTTCGGTGGCACTTTACCCCATTTCGGTTGTGAAAACTAGGCTGCAGGTTGCCACAAAGGATGCCGTAGAGAGAAGTGTGTTTTCTGTTGTGAAAGGACTACTTAAAACAGATGGCATCCCTGGTCTGTATAGAGGGTTTGGCACAGTTATTACTGGTGCTATTCCTGCCAGAATAATTTTCCTCTCCACTCTAGAGACCACAAAGGTGGCTGCTTTCAGAATGCTTGAACCGTTTCGACTATCCGAAACTACCCAAGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGATTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAGTACAGCGGGGGTTTGGATGTTGCTCGCAAGGTTTTAAGATCTGATGGCATCCGGGGATTGTATAGAGGGTTTGGTCTGTCTGTTATGACTTATTCACCTTCTAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCGTCATTTGGAGGTTCCTGGGTCATGATACCAAATATGATGAACACACTCCTAGTCTGCAGAAAATAATGTTGGTTCAGGCTATGGGAGGGATTATTGCTGGTGCATCTTCATCCTGCATAACAACACCATTGGATACTATCAAGACACGATTACAGGTTTGCATAATTTCATTGAACCGGATTATTTCTGTTTTTTAG 789 0.4411 MNFSQFYRLDKTRFYVVGAGLFTGVSVALYPISVVKTRLQVATKDAVERSVFSVVKGLLKTDGIPGLYRGFGTVITGAIPARIIFLSTLETTKVAAFRMLEPFRLSETTQAAIANGVAGMTSSIFAQSVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLGHDTKYDEHTPSLQKIMLVQAMGGIIAGASSSCITTPLDTIKTRLQVCIISLNRIISVF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01038 262 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 198 IPR018108 -
Vimu6g01038 262 Pfam Mitochondrial carrier protein 21 94 IPR018108 -
Vimu6g01038 262 Pfam Mitochondrial carrier protein 113 199 IPR018108 -
Vimu6g01038 262 Pfam Mitochondrial carrier protein 221 250 IPR018108 -
Vimu6g01038 262 Gene3D Mitochondrial carrier domain 7 146 IPR023395 -
Vimu6g01038 262 Gene3D Mitochondrial carrier domain 147 257 IPR023395 -
Vimu6g01038 262 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 5 251 - -
Vimu6g01038 262 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 262 IPR018108 -
Vimu6g01038 262 SUPERFAMILY Mitochondrial carrier 10 253 IPR023395 -
Vimu6g01038 262 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 95 IPR018108 -
Vimu6g01038 262 PRINTS Mitochondrial carrier protein signature 227 249 IPR002067 GO:0055085
Vimu6g01038 262 PRINTS Mitochondrial carrier protein signature 171 189 IPR002067 GO:0055085
Vimu6g01038 262 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01038 Vimu-Chr6 11080242 11082452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01038 7 257 Chloroplast and Mitochondria Gene Families AT5G15640 75.000 6.36e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01038 K15121 - gmx:100782750 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01038 6 11080242 11082452 Vimu6g01038 6 11080242 11082452 ECH
Vimu8g00725 8 14127401 14130903 Vimu6g01038 6 11080242 11082452 PCT