Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01036 ATGTTTCCTAAATGTTTGGGTTTCTGCGGTTGGAAGCACACAAGTTCATCTCAGAAACAGTATCCAACGGTAATACAAGAGTTGTGCCACCAATTTTCTCTCACTGATATTAAGAAATCGACAAACAACTTTGACAGTACCAGACTAATTGGATATTCAAGCTTTGGTAAAGTATACAAAGGTCGCCTCCAACACCAGGATGGTATTGAATATTCAGTTGCAATAACGCGATTGTATGCAGAAGAAGGCAATGAAGGACGCGACTGGTTTAAGAAAGAAGTAGAGTTGCTCTGTCAGCTTCGTCACCCTAATTGTGTGTCTCTTATAGGATTCTGCAACCACAAGAAAGAGAAGATTGTTGTGTACGAGTACATGTCAAATGAATCTCTAGATCGACACATACTAAGAGGTGGGAAAACAGAAGCACTGTCATGGAGGAAAAGGATAGAGATATGCATAGGAGTAGCTCGTGGACTACACTACCTTCACGCTGGACTCAAGCGCAACATTATTCACCGTGACGTTTGTCTCAGAAACATTCTTCTGGACGCCCACATGGAACCAAAACTTGCAGGTTTCTGCCGTAGCATACAGGGAGCACACTTTATGTCAAAGCCAAAAGCAATTCCAATAGATGAATTTACTTGGGGTAGTTATGGCTACCATCCTATACACGACTTCAGAGACACTACCGTCACAGATAAATGTGATGTTTTCACATTTGGTTTGCTTCTTCTAGAAGTAGTGTGTGGAAGAAGGCATTCTGATATGAGAAGAGTGGATGGATTTCTGGAGAAGCCTGTTGAGGAGAATATTAATTTGAATATCAAAGGAAAGATTGTGCCAGATTGTTGGAAAGTCTTTATAGATATCATCCAAAGATGTGTGAATTATGAAGCAGATGAGCGACCAACTATGGTTACTAATTGTCGTCTTTCTGTTAGTCATACAAAATGCCATGAAGATGAAAGCTATGCCTTGTTGAAATTTAAGGAAAGTTTTGTCATTAGTAATGTCATCAACATTGATCTTAGTAGCAGCCACATCTATGGTACAATGGATGCTAATAGCAGCCTCTTTCACCTCAAACACCTTCAAAGCCTTGATCTTTCTGATAATGACTTTAATCACTCTCAAATTCCATCAAGGATTGGTGAGCTTCGACAGTTAAGATATCTGAACCTTTCTGGAGCCAATTATTTTGGCGAAATTCCACAAGAAGTTTCACATTTGACCAAGTTGTTGTCTCTTGATCTGTGTAGTTTATTCTATTCACCGGATCCTGTCAATCTGTTGAGTTTCAACATATCCACTCTAAGAAGCTTAATTCAAAACTCATCTAATCTTGAAATTATTCGTCTTAATTATGTGTCGATTTTATCACCTGTACCTGATATATTCATAAATCTTACTTCTTTAAAACAACTCAGTCTTTACAGTTGTGAACTGTATGGGGAATTTCCAATAGGAATATTTCATCTTCCAAGCTTGAGATCTCTGGATTTGGGAAATAATTATCACCTCAGTGGTAAACTTCCAAATTTTAATTCAAGTGCACAAATTACCATGTTGCAACTCACTTCCACAAGTTTCTATGGTACACTGCCTGCTTCCATTGGGAATCTTAAGTCTTTGAAATATTTACTAATTTCACAATGCAAATTTTTAGGTTTTATCCCTTCCACATTTGGGAACCTCACTGAGCTTACGTATCTAGATGTTGGATACAATCATTTCAAGGGTCATCTTTCTTCTTTACTGGTAAATCTTACAAAATTAAGCACCCTGAGAGCAGGTTTTAATCAATTTTCTTCTGACACCATCTCATGGATTTGTAAGCTGCCAGGAATAACTGATTTAGAACTAGACTTTGTAAATATTGGCTTCGATAGTCCACTCTGTTCTGCAAATCTCACCCAGCTATCTGTGCTATCCCTACGTTACACCAATTTAAGTGGACAACTTCCATCTTGGATAATGAACCTAACCAGCTTAGGTTACATGGATCTTTCAGGAAATAATCTTCAGGGTGAAATTCCAAACTCTCTCTTCAAACTTGAGAACCTAGAAACTCTTTGTCTGTCCAGTAACTTGTTGGAAGGAGAATTAGAGCTTAATAAGTTTCTAATGCTCAAAATGTTGTTTTTTGTTGAATTATCTTTGAACAAATTGTCATTAATTAGTGGAAAAAATTCATTCAATGCGAGCCTTTCTCACATTCAATTGTTAGGTTTGGGTTCATGCAATTTGAAAGAGTTTCCAAAATTTCTCCAGAACTTGTCTGAGCTGTCATATCTTTACGTGTCAGACAATAATATCAATTCATTCCCCAGTTGGACCTGGGGGAAAACAAGTCTTCAGAGGTTATATGCTTCCAATAACTCATTGACAGGAAGTATATCTCCACTGATATGCAATTTGAAATCTCTTATGCATCTTGATTTATCATTCAACAACTTAAGTGGCATGGTTCCCTCGTGTTTGGGAAGTTCTATGCAATCTCTGCAGACATTGGTGCTCAAAGGAAACAAATTGTCTGGCTCCATTCCTCAAAGATATATGGTGGCAAGCAGTTTGAGAATGATAGATTTAAGCAATAACAATCTGCACGGTCAACTGCCAACAGAATTGGTAAAGTGTACAATGTTAGAGGTTATTGATTTCAGCCATAACAAAATTAATGATTCGTTTCCATGCTGGTTGGGCACTCTTCCGGAGCTGAAAGTTGGTGCTTTAGGTCATAATCATTTGTATGGATCTATAAGGTGCCCTGCAACGTTCTCATTTCCCAAACTGCACATCATTGATCTTTCTCACAATCAGTTCTCTGGAAACTTTCCTTGGGAAACAATCCAGAATTGGAAATCCATGATGGCTTCCAACGAGAGTAGATTGGAGTATGAGCTTCATTCGAAAATCACGTTGTCGGGAAGGGTCAGTTGCTGGAGTGATGGTTATAGTTATTCGCTGACAATGTTTAACAAAGGGAGTGTCTTGGTTTATCAAAATCTCCAGGAGCTTTACTACTTGATAGCCATTAATCTTTCAAGCAATAAATTCTCTGGGGAAATTCCTGTTGTTATGGGAGACTTAACTGGACTTGTTTTTCTCAACTTCTCCAACAACATGCTTACTGGCAGCATTCCTTCTTCCTTAGGAAAGCTTTCGAACCTTGAAGCATTGGACCTTTCTTTCAATAGATTATCAGGGAACATTCCCCTAGAGTTGGAAGAACTGACTTATCTCTCATACTTGGATGTGTCCTTTAACAACCTCTCAGGACACATACCACAACATAAGCAGTTTGCTACATTCCAAAATGGTTCATTTATGGGTAACCAAGGACTGTGCGGGAGTCCATTATCCAAGAAATGTGAGAATGATGCAGGGTCACCGTTTGTTCCACATTCTGCATCTGATGATGACGATGATGATAAAGATTCAGGATTTTTTGTTGGATTTAACTGGAAAGTGGTTCTGATTGGGTACGGTGGTGGACTTCTTGCGGGATTGGCACTTGGATGGACTTTCAGTCAAGAAGTATTTGAATGGCTTAAGACTGTTCATTTGAGTTTTTATTTTTTCTTAAAGGGATGGTTTTGA 3603 0.3841 MFPKCLGFCGWKHTSSSQKQYPTVIQELCHQFSLTDIKKSTNNFDSTRLIGYSSFGKVYKGRLQHQDGIEYSVAITRLYAEEGNEGRDWFKKEVELLCQLRHPNCVSLIGFCNHKKEKIVVYEYMSNESLDRHILRGGKTEALSWRKRIEICIGVARGLHYLHAGLKRNIIHRDVCLRNILLDAHMEPKLAGFCRSIQGAHFMSKPKAIPIDEFTWGSYGYHPIHDFRDTTVTDKCDVFTFGLLLLEVVCGRRHSDMRRVDGFLEKPVEENINLNIKGKIVPDCWKVFIDIIQRCVNYEADERPTMVTNCRLSVSHTKCHEDESYALLKFKESFVISNVINIDLSSSHIYGTMDANSSLFHLKHLQSLDLSDNDFNHSQIPSRIGELRQLRYLNLSGANYFGEIPQEVSHLTKLLSLDLCSLFYSPDPVNLLSFNISTLRSLIQNSSNLEIIRLNYVSILSPVPDIFINLTSLKQLSLYSCELYGEFPIGIFHLPSLRSLDLGNNYHLSGKLPNFNSSAQITMLQLTSTSFYGTLPASIGNLKSLKYLLISQCKFLGFIPSTFGNLTELTYLDVGYNHFKGHLSSLLVNLTKLSTLRAGFNQFSSDTISWICKLPGITDLELDFVNIGFDSPLCSANLTQLSVLSLRYTNLSGQLPSWIMNLTSLGYMDLSGNNLQGEIPNSLFKLENLETLCLSSNLLEGELELNKFLMLKMLFFVELSLNKLSLISGKNSFNASLSHIQLLGLGSCNLKEFPKFLQNLSELSYLYVSDNNINSFPSWTWGKTSLQRLYASNNSLTGSISPLICNLKSLMHLDLSFNNLSGMVPSCLGSSMQSLQTLVLKGNKLSGSIPQRYMVASSLRMIDLSNNNLHGQLPTELVKCTMLEVIDFSHNKINDSFPCWLGTLPELKVGALGHNHLYGSIRCPATFSFPKLHIIDLSHNQFSGNFPWETIQNWKSMMASNESRLEYELHSKITLSGRVSCWSDGYSYSLTMFNKGSVLVYQNLQELYYLIAINLSSNKFSGEIPVVMGDLTGLVFLNFSNNMLTGSIPSSLGKLSNLEALDLSFNRLSGNIPLELEELTYLSYLDVSFNNLSGHIPQHKQFATFQNGSFMGNQGLCGSPLSKKCENDAGSPFVPHSASDDDDDDKDSGFFVGFNWKVVLIGYGGGLLAGLALGWTFSQEVFEWLKTVHLSFYFFLKGWF 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01036 1200 SUPERFAMILY L domain-like 994 1120 - -
Vimu6g01036 1200 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 609 703 - -
Vimu6g01036 1200 Pfam Protein tyrosine and serine/threonine kinase 47 307 IPR001245 GO:0004672|GO:0006468
Vimu6g01036 1200 SUPERFAMILY Protein kinase-like (PK-like) 19 307 IPR011009 -
Vimu6g01036 1200 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 993 1129 - -
Vimu6g01036 1200 FunFam Receptor-like protein kinase ANXUR2 9 124 - -
Vimu6g01036 1200 ProSiteProfiles Leucine-rich repeat profile. 1057 1080 IPR001611 GO:0005515
Vimu6g01036 1200 SUPERFAMILY RNI-like 342 724 - -
Vimu6g01036 1200 Pfam Leucine rich repeat 809 869 IPR001611 GO:0005515
Vimu6g01036 1200 Gene3D Transferase(Phosphotransferase) domain 1 126 319 - -
Vimu6g01036 1200 ProSiteProfiles Protein kinase domain profile. 44 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01036 1200 PRINTS Leucine-rich repeat signature 1055 1068 - -
Vimu6g01036 1200 PRINTS Leucine-rich repeat signature 810 823 - -
Vimu6g01036 1200 SMART LRR_typ_2 1055 1079 IPR003591 -
Vimu6g01036 1200 SMART LRR_typ_2 807 830 IPR003591 -
Vimu6g01036 1200 SMART LRR_typ_2 362 387 IPR003591 -
Vimu6g01036 1200 SMART LRR_typ_2 470 494 IPR003591 -
Vimu6g01036 1200 SMART LRR_typ_2 1031 1054 IPR003591 -
Vimu6g01036 1200 SMART LRR_typ_2 857 880 IPR003591 -
Vimu6g01036 1200 SMART LRR_typ_2 662 686 IPR003591 -
Vimu6g01036 1200 SMART LRR_typ_2 566 589 IPR003591 -
Vimu6g01036 1200 SMART LRR_typ_2 760 783 IPR003591 -
Vimu6g01036 1200 ProSitePatterns Tyrosine protein kinases specific active-site signature. 170 182 IPR008266 GO:0004672|GO:0006468
Vimu6g01036 1200 Gene3D Phosphorylase Kinase; domain 1 8 124 - -
Vimu6g01036 1200 Gene3D Ribonuclease Inhibitor 707 1131 IPR032675 -
Vimu6g01036 1200 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 709 980 - -
Vimu6g01036 1200 Gene3D Ribonuclease Inhibitor 382 706 IPR032675 -
Vimu6g01036 1200 Gene3D Ribonuclease Inhibitor 320 381 IPR032675 -
Vimu6g01036 1200 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 513 607 - -
Vimu6g01036 1200 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 577 1126 IPR046956 -
Vimu6g01036 1200 SUPERFAMILY L domain-like 636 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01036 Vimu-Chr6 11068774 11075015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01036 312 1184 Receptor kinase-like Gene Family AT1G47890 34.497 1.35e-130 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01036 PK_Tyr_Ser-Thr 1.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01036 - - gmx:100782169 1175.23