Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01034 ATGACCGGTCGGCCATTGCCTAACTTTATTATTCTTGAAGCTGTCGGTATTACGCCTGGTGTCGCTTCGGGTCGGCCTCAAGCCGGACCGGGTGACCGGCAAGTGTTTAAAACTATGTTTATCAAATGTCTAGGATTCAGCTGTTCCAAGAACACATCTCAGAGAAATTATCCAACAATTATAGAAGAGTTGTGCCATCAATTTTCTCTCTCCCATCTTACCAAATCAACCAACAACTTTGATCCAAAAAGGGTAGTTGGACGTAATTCATTTTGCAAAGTATATGAAGCTTCTCTCCAAGATAGACACGGCTCTCCTTATACAGTCACGATAAAAAGATTTAATGTAAAAGACTATGACATCTTCAAGAATGAAATAGAGTTGCTCTGCCAGCTTCGTCACCCTAATATTGTCTCTCTTGTAGGATTCTGCAACCACAAGAAAGAGAAGATTATTGTGTACGAATACCTGTCCAATGAATCTCTTTATCAACACATACAAAGTGGGAAACTGCCATGGAAGAAAAGGTTGGAGATCTGCATAGGAGCAGCACGTGGACTGCACTATCTTCATGCTGGAGCAAAGCGCACCATCATTCATCGTAATATCAATCCTAGCAACATTCTTTTGGATGGGAACATGGAGCCAAGGCTTGCAGATTTTGGCCTTAGCGTACAGGGACAGCGTTTTATGTCAAAGCCAAAGCCGATTAAAGTAGATTCTGTTGTTGGTACTTTTGGCTACCTGGCTAAGGAGCATCTCGTGGACCTTACCATCACGGATAAAACTGATGTTTACTCATTTGGTATGGTTCTATTAGAAGTTGTGTGTGGAGGGAGATATGTGGAAAGGGTAACAGAAAGAGAATTTCTGAGGCCTGTTGAAGAGAAACTTCATCCGAATATCGAAGGAAAGATTGCACCTGAGTGTTGGCAAGTCTTTGTAGAAATCATTCAAGGATGCGTAAAATATGAAGCAGATGAGCGACCAACGATGGGTGAAGTAGAGATGCAACTTGAGCATGCTTCGTTGTTGCAGGAACAAGCAGATGCTGCAAATACCAACCTTCTTTTGTCTGTTGACCGGTCGGTCCGGTCGGTCTGGTTGTTTGCTTTGTGTGGGCTTTGTATGGTTTACCGGGTGCGCGTTTTGGGCTTGTTTTGGGCTTGTTTTGTTTGCCGGTTTTGGCCTGTTGCGCGTTTACGGTTTTCTCGAAACGCCCCAAGAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCAAGAAACAATGGCAACCAAGTTCGACGTGGAGAAATTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTGATGAAGCGTTGAAGGGTGAGTCGAGGATGAGTGATGCCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCGTTGGTGATAAGGTACTGAGGGAGGTTGCGAAGGAGAAAACTGCCGCTGAAATCTGGGCAAAACTAGAGTCTCTGTACATGACGAGATCGTTGGCTCATAGGTTGTGCCTGAAGCAGCAACTCTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAGATTGCAGAATTCAGCAAGATAGTTGATGATCTAGAGAATATTGAAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTGAATGCGCTTCCAAGAACCTTCGAGCATTTCAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTTTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTTCAAGATTCGAAGACAACCGAGGAAGGAGCGTCCGGATTGATCTCGGTGAAAGGGAAAGGGAAGAAGCAGTCTGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGCCGGTCGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCTGGAGTGCTGGTGGCTTCGTCTGAAGATCCTCAAAGGAGCTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTGAAGGAGTTTTTTGAGAATCTTGATCAGAAAGAGCATGGTAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGTTGCAGGCTGTTAGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTCTGTTCTGGAGATTTTGTGGTTGCCAAAGGCAGAAGGAGGAACGGCTTGTACATTCTGGAGGGATCAACTGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGGGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAGGCTTGCTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGAAAATCACACAGGATACCGTTCGGAAAAGGGAAACACTCAACCGAACGCCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAAGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAAAATAAGTCTGAAACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGGGGTGTAGGCTGAAATGCCTAAGAACCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGGATCAGGAGGCACAGAACGGTCGTTGGAACTCCGCAACAGAATGGCTTGGCCGAACGGATGAATAGAACCATTCTGGAGAGGGTCCGGTGCATGTTGTTGGGATCAGGGTTGTCAAAGGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTCTATCTGATTAACAGGAGTCCGTCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGACCGGCTGATTACTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAAATGTATCTTTCTTGTATACGCCGAAGGAGTTAAGGGATACAGGTTATGGAGGTTAGATTCACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCTGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGCACGCCCGGTGGGACTGAGGAAAACCAAACAGGTGAAGGGCAAGTTGAAAACGGTCGGACGATAGAGGAGAACCGATCGAATGAATTTCGAACAGACCTTGGTGATGATACAGATGGTATGTCTGGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAATCAAACGGTTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAATGCTGCTGAAGATCTTAACCGATCGGATGAACCGAGAAGTTATAAGGAGGCCCTTGACAACAGCGACCGGCATCTTTGGCAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGAAAAAGAATAGCACCTGGAGATTGGTGGATCTTCCGAAGGGTAAGAAGGTCATAGGTTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTATCATGAGATCTTTGCTCCAGTGGTTAAGCATTGTTCGGTCAGAGTTCTGATGGCAATAGTTGCGCATTGCAATTTGCATCTTGAACAGTTGGACGTTCGGACAGCTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATGATAGGGTGTGTCTGTTGCAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGACGGTGAAATGTTATATCTCCTGCTTTATGTGGATGATATCCTAATTGCTAGCAGTGACAGGGGCATGATCGGTGAGACGAAAGCAAGGTTGGCGGATGCTTTCGAAATGAAAGAGCTAGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAGACCGGGCGGTAACCTTTTTCTGTCTCAGGAGTGTTATTTGTAG 4482 0.4601 MTGRPLPNFIILEAVGITPGVASGRPQAGPGDRQVFKTMFIKCLGFSCSKNTSQRNYPTIIEELCHQFSLSHLTKSTNNFDPKRVVGRNSFCKVYEASLQDRHGSPYTVTIKRFNVKDYDIFKNEIELLCQLRHPNIVSLVGFCNHKKEKIIVYEYLSNESLYQHIQSGKLPWKKRLEICIGAARGLHYLHAGAKRTIIHRNINPSNILLDGNMEPRLADFGLSVQGQRFMSKPKPIKVDSVVGTFGYLAKEHLVDLTITDKTDVYSFGMVLLEVVCGGRYVERVTEREFLRPVEEKLHPNIEGKIAPECWQVFVEIIQGCVKYEADERPTMGEVEMQLEHASLLQEQADAANTNLLLSVDRSVRSVWLFALCGLCMVYRVRVLGLFWACFVCRFWPVARLRFSRNAPRTQQLAPTVGQGFKNSQETMATKFDVEKFNGANDFGLWKIKMEAILIQQGCDEALKGESRMSDAMTQEEKKKMGDKARSAIILCVGDKVLREVAKEKTAAEIWAKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIEVKLEDEDKAVILLNALPRTFEHFRDALLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLISVKGKGKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKAGRPQETADVAEASEGYESAGVLVASSEDPQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQGVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVEDGVMRVCSGDFVVAKGRRRNGLYILEGSTVIGHVSVASGTENTARLWHLRMGHISEKGLEELEKQGLLLGDKLQKLDFCDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGRAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRTDNGLEFVSEEFNGFCKEKGIRRHRTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAVYLINRSPSSALNFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAAKCIFLVYAEGVKGYRLWRLDSPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVENGRTIEENRSNEFRTDLGDDTDGMSGEGSHGKAAGVDLRNYQLVRDRERRISKPIKRFGEADLICYALNAAEDLNRSDEPRSYKEALDNSDRHLWQGAMEEELEALKKNSTWRLVDLPKGKKVIGSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAIVAHCNLHLEQLDVRTAFLHGDLEETIYMKQPDGFAVDDRVCLLQKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHDGEMLYLLLYVDDILIASSDRGMIGETKARLADAFEMKELGEARRILGIDIKRDRPGGNLFLSQECYL 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01034 1493 SUPERFAMILY Ribonuclease H-like 891 1064 IPR012337 -
Vimu6g01034 1493 Gene3D - 629 682 - -
Vimu6g01034 1493 ProSiteProfiles Zinc finger CCHC-type profile. 653 669 IPR001878 GO:0003676|GO:0008270
Vimu6g01034 1493 MobiDBLite consensus disorder prediction 1143 1162 - -
Vimu6g01034 1493 Coils Coil 548 568 - -
Vimu6g01034 1493 MobiDBLite consensus disorder prediction 1140 1194 - -
Vimu6g01034 1493 MobiDBLite consensus disorder prediction 625 647 - -
Vimu6g01034 1493 Gene3D - 886 1064 IPR036397 GO:0003676
Vimu6g01034 1493 PANTHER GAG-POL-RELATED RETROTRANSPOSON 776 1446 - -
Vimu6g01034 1493 FunFam Receptor-like protein kinase ANXUR2 45 156 - -
Vimu6g01034 1493 Gene3D Transferase(Phosphotransferase) domain 1 157 362 - -
Vimu6g01034 1493 ProSiteProfiles Integrase catalytic domain profile. 889 1055 IPR001584 GO:0015074
Vimu6g01034 1493 Pfam GAG-pre-integrase domain 812 878 IPR025724 -
Vimu6g01034 1493 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1270 1483 IPR013103 -
Vimu6g01034 1493 SUPERFAMILY Protein kinase-like (PK-like) 54 340 IPR011009 -
Vimu6g01034 1493 FunFam Receptor-like protein kinase ANXUR2 157 359 - -
Vimu6g01034 1493 Pfam Protein tyrosine and serine/threonine kinase 83 339 IPR001245 GO:0004672|GO:0006468
Vimu6g01034 1493 Pfam Integrase core domain 891 992 IPR001584 GO:0015074
Vimu6g01034 1493 Pfam gag-polypeptide of LTR copia-type 480 609 - -
Vimu6g01034 1493 SUPERFAMILY DNA/RNA polymerases 1269 1478 IPR043502 -
Vimu6g01034 1493 SUPERFAMILY Retrovirus zinc finger-like domains 644 674 IPR036875 GO:0003676|GO:0008270
Vimu6g01034 1493 SMART c2hcfinal6 653 669 IPR001878 GO:0003676|GO:0008270
Vimu6g01034 1493 Gene3D Phosphorylase Kinase; domain 1 44 156 - -
Vimu6g01034 1493 ProSiteProfiles Protein kinase domain profile. 80 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01034 1493 MobiDBLite consensus disorder prediction 1163 1187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01034 Vimu-Chr6 11053327 11058748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01034 47 350 Receptor kinase-like Gene Family AT3G51550 40.248 9.10e-62 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01034 PK_Tyr_Ser-Thr 4.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01034 - - brp:103832254 880.552