Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01033 ATGAGTGTTGAACTGTATCAGCTGTGGCTCATCCACCAACTTCTCCACTCTCGACACTCGGAATTGGACTTCAGACAATCACTTCTGCAAGATTTCAATGCTTCACTCAACGCCGATGCCGATGATGACCCTAGCCACCCTGACATCTTGTTCAAAGAGTATTGCGTTTACTTTGGAGACGGTGAGAACCTGACTATAACCTTCTTTCCCAGTACTACTGATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCCATGCCCCATTATCTCTACTACACCGATCCTCACTCCACAGAGCAGCCGCAATATGTTGGCGCAATGAATCCATATGTCACTGAGCACAAATTTGCTCTCGAGACCATGTTCAGGTTAGTCGTTTCCGCTGAAATTCTTTCCTCAGGGGACACGGGTATGCTCAGAACGTGGAGACCTGACATCAAGTACGTAACTACTCAATATTATCAACCAGTTGATTATGTGAAAATTAAAAACCTGACGTTCATTACAACCTATAAGTACACGGCACCAGACCAAGTGTACAGAACCGTTCGGAGTATGGGACGTAATGGCTCTATCAACATGGGTTTCAGTCTCACATGGCAGCTTCCTGTTGATTCTGGCTTCACCTACATGATACGGTTACACTTTTGCCAGCTTGATCCGAGGGTTAACAACACTGGTGACTTGATTTTCAACATCATCATAGCGGATCAGTTGGCAAGCAACTGGACAGACCTTCTCATGTGGACTGATAATCAGAGGGGTGTACCGGTGGTTAAAGACTACGTAGTTTCCATCTTAGCCCCAGATAATCAGAAAAAGGCATATCTTTCTGTGAAATTACACCCTCACGATAAGAGCTTGATCAAGGACGCACAACTAAACGCAATTGAACTCTTCAAAATCAGCGACCCAACAGGTAATCTCGCTGGGCCGAACCCAGACCTGCCTCCATTATCAAAAACTAAAAAGAGCAGAACCCCTGCCGCCGTTGCAGGGGCAGTTTCAGGTGTCCTTTTGTTGTCCTTTATTGTCGCCTTTTTCCTCATCAAACGCCAGAAGAACGTCGTTGACAACAAGGGTCCCAATAAAAAGGAAGGAACTTCTCGGTGCAGCGGCTTATTACTGATACCGACCGCCCTCTGCCGACAGTTCTCAATGGCCGAAATGAAAGTCGCAACCAACAACTTCGACAAAGTCTTCGAGGTTGGCGTGGGAGGCTTCGGCAACGTGTACAAAGGTCATATCGACAAAGGCTCAACTACTGTCGCAGTCAAAAGGCTTAAACCGGGTTCTCGCCAAGATATTCGCGAGTTCAAGAACGAGATTCAAATGCTGTCTCAACTTTGTCACCCCAATATCGTTTCCCTCATTGGTTACTGTTACGAGAACAACGAGATGATCCTCGTTTACGATTTCATCAATAACGGCAACCTCTGTGACCATCTCTACGACACTGATAATCCGTCTCTGTCGTGGAAACGTAGGCTCCAGATATGCGTAGGTGTTGCACGAGGATTGCATTATCTGCATACAGGTGTGGAGCAGGTGATCATTCACCGTGACGTGAAGAGCAGCAATATCTTATTGGATGAAAAATGGGTGACGAAGGTTTCAGATTTCGGATTATCCCGAATTGGGGGGCCCAGTGGTTCTTCGATGAGTATCGTGAGCGTGAACACTGAGGTGAGAGGTAGTATTGGATATTTGGACCCAGAATATTACAAGCGATACCTTTTGACGGAGAAGTCTGACGTGTACTCACTTGGAGTGATGTTGTTGGAGGTGTTATCTGGGAGGCAGCCTTTGCTTCCTGGGGAGGAAAAGCGACGAATTTCACTTGTTAATTGGGCGAAACATTGCTATGAGAAGGGAACTCCAAATGAGATTGTGGATACAGAACTCAAGGGCCAGGTAGCACCTCAGTCTCTGCGAAAATTTGTTGAGGTTGCATTCACCTGTTTGCTTGAAGACGGGACTCAACGACCTTCCATGAACGATGTCGTTGAGCTGTTGGAGTTTGCTCTTCAGCTTCAGGATGGTGTTGTTAATGGTGCGTTGCAGACTGGCCTCCCCATGAAAGATTTTGCTCCTGAGTGTCGGCAAGTCTTTATAAATATCATGCAAGGATGCGTGAAATATGAAGCAGATGAGCGACAAACAATGGGTGAGGTACGGGTGCAACTTGAGTATGCTCTGTTGTTGCAGGCACAAGCAGATATCACAAACATTCATGGTGATTATATCTTAATGTCTAAAACCGTTATTAACTTGCCTGAGAGGGAAGGATGA 2295 0.461 MSVELYQLWLIHQLLHSRHSELDFRQSLLQDFNASLNADADDDPSHPDILFKEYCVYFGDGENLTITFFPSTTDSYAFINGIEIVSMPHYLYYTDPHSTEQPQYVGAMNPYVTEHKFALETMFRLVVSAEILSSGDTGMLRTWRPDIKYVTTQYYQPVDYVKIKNLTFITTYKYTAPDQVYRTVRSMGRNGSINMGFSLTWQLPVDSGFTYMIRLHFCQLDPRVNNTGDLIFNIIIADQLASNWTDLLMWTDNQRGVPVVKDYVVSILAPDNQKKAYLSVKLHPHDKSLIKDAQLNAIELFKISDPTGNLAGPNPDLPPLSKTKKSRTPAAVAGAVSGVLLLSFIVAFFLIKRQKNVVDNKGPNKKEGTSRCSGLLLIPTALCRQFSMAEMKVATNNFDKVFEVGVGGFGNVYKGHIDKGSTTVAVKRLKPGSRQDIREFKNEIQMLSQLCHPNIVSLIGYCYENNEMILVYDFINNGNLCDHLYDTDNPSLSWKRRLQICVGVARGLHYLHTGVEQVIIHRDVKSSNILLDEKWVTKVSDFGLSRIGGPSGSSMSIVSVNTEVRGSIGYLDPEYYKRYLLTEKSDVYSLGVMLLEVLSGRQPLLPGEEKRRISLVNWAKHCYEKGTPNEIVDTELKGQVAPQSLRKFVEVAFTCLLEDGTQRPSMNDVVELLEFALQLQDGVVNGALQTGLPMKDFAPECRQVFINIMQGCVKYEADERQTMGEVRVQLEYALLLQAQADITNIHGDYILMSKTVINLPEREG 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01033 764 FunFam Receptor-like protein kinase FERONIA 475 692 - -
Vimu6g01033 764 FunFam receptor-like protein kinase FERONIA 362 474 - -
Vimu6g01033 764 SUPERFAMILY Protein kinase-like (PK-like) 378 676 IPR011009 -
Vimu6g01033 764 ProSitePatterns Protein kinases ATP-binding region signature. 404 427 IPR017441 GO:0005524
Vimu6g01033 764 ProSiteProfiles Protein kinase domain profile. 398 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01033 764 PANTHER OS07G0166700 PROTEIN 383 680 IPR045272 GO:0004714|GO:0006468
Vimu6g01033 764 Gene3D - 120 304 - -
Vimu6g01033 764 Pfam Malectin-like domain 28 303 IPR024788 -
Vimu6g01033 764 FunFam FERONIA receptor-like kinase 117 304 - -
Vimu6g01033 764 Gene3D Phosphorylase Kinase; domain 1 383 474 - -
Vimu6g01033 764 Gene3D Transferase(Phosphotransferase) domain 1 475 683 - -
Vimu6g01033 764 CDD STKc_IRAK 404 674 - -
Vimu6g01033 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Vimu6g01033 764 SMART serkin_6 398 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01033 764 Pfam Protein tyrosine and serine/threonine kinase 403 673 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01033 Vimu-Chr6 11048741 11051537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01033 27 681 Receptor kinase-like Gene Family AT3G51550 43.084 2.42e-176 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01033 PK_Tyr_Ser-Thr 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01033 - - vum:124832507 1258.05