Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01030 ATGAGTAGAGGTGGACAGTGGTGGATTAGAGGCAAGTGTTTGAAACTATGTTTCTCAAATGTCTGGGCTTCAGCTAGAAATTATCCAACAATTATAGAAGAGTTGTGCCATCAATTTTCTCTCTCCCATCTTACCAAATTAACCAACAACTTTGATCCAAAAAGGGTAGTTGGCCGTGGAGCATTTAGCAAAGTATATGAAGCTTCTCTGCAACGTAGTGACGGCTCTCCTTATACAGTCGCAATAAAGAGATTTAATGTAAAAGACAGTGACATCTTCAAGAATGAAATAGAGTTGCTCTGCCAGCTTCATCACCCTAATATCGTCTCTCTTGTAGGATTCTGCAACCACAAGAAAGAGAAGATTATTGTGTACGAATACCTGTCCAATGAATCTCTTTATCAACACATACAAAGTGGGAAACTGTCATGGAAGAAAATGTTGGAGATCTGCATAGGAGCAGCACGCGGACTGCACTATCTTCACGCTGGAGCAAAGCGCACCATCATTCATCGTAATATCAAACCTAGCAACATTCTTTTGGATGGAAACATGCAGCCAAAGCTTGCAGATTTTGGCCTTAGCGTACAAGGACAGAGTTTTATGTCAAAGCCAAAGCCGATTAAAGTAGATTCTGTTGTTGGTACTTTTGGCTACCTGGCTAAGGAGCATCTCGTGGACCTTACCATCACGGATAAAACTGATGTTTACTCATTTGGTATGGTTCTATTAGAAGTTGTGTGTGGAGGGACATATGTGAAAAGGCTAGCAGAAGGAGAATTTTTTAGGCCTGTTGAAGAGAAACTTCATCCGAATATCGAAGGAAAGATTGCACCTGAATGTTGGCAAGTCTTTGTAGAAATCATTCAAGGATGCGTAAAAAATGAAGCAGATGAGCGACCGACTATGGGTGAAGTAGAGATGCAACTTGAGCACGCTTTGCTATTGCAGGAACAAGCAGATACTGCAAATACCAATGCTGAATATACCTTATTGTCCCAAACCATTATTAATTAG 1017 0.4071 MSRGGQWWIRGKCLKLCFSNVWASARNYPTIIEELCHQFSLSHLTKLTNNFDPKRVVGRGAFSKVYEASLQRSDGSPYTVAIKRFNVKDSDIFKNEIELLCQLHHPNIVSLVGFCNHKKEKIIVYEYLSNESLYQHIQSGKLSWKKMLEICIGAARGLHYLHAGAKRTIIHRNIKPSNILLDGNMQPKLADFGLSVQGQSFMSKPKPIKVDSVVGTFGYLAKEHLVDLTITDKTDVYSFGMVLLEVVCGGTYVKRLAEGEFFRPVEEKLHPNIEGKIAPECWQVFVEIIQGCVKNEADERPTMGEVEMQLEHALLLQEQADTANTNAEYTLLSQTIIN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01030 338 FunFam Receptor-like protein kinase ANXUR2 128 332 - -
Vimu6g01030 338 SUPERFAMILY Protein kinase-like (PK-like) 29 310 IPR011009 -
Vimu6g01030 338 PANTHER OS07G0166700 PROTEIN 36 317 IPR045272 GO:0004714|GO:0006468
Vimu6g01030 338 Gene3D Phosphorylase Kinase; domain 1 18 127 - -
Vimu6g01030 338 FunFam Receptor-like protein kinase ANXUR2 17 127 - -
Vimu6g01030 338 ProSiteProfiles Protein kinase domain profile. 51 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01030 338 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Vimu6g01030 338 ProSitePatterns Protein kinases ATP-binding region signature. 57 83 IPR017441 GO:0005524
Vimu6g01030 338 Pfam Protein tyrosine and serine/threonine kinase 54 310 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01030 Vimu-Chr6 11034599 11035710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01030 30 321 Receptor kinase-like Gene Family AT3G51550 42.122 1.03e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01030 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01030 - - gmx:100812131 448.358