Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01029 TTTGCTATTGTGTGTTACTTTGATGACAGATTATCGATGGACCCAAGTTGCACACGAACTGCTTTAAGAACCATTATCTTCCTCTTCCTTATGTGCTGCCTCTCTTTCCTTTCTACAGCAGACGATATTTATCATCCCACTGACCTCTTTAGCATCAGCTGTGGCTCATCCACCAACTTCTCCACTCTCGACACTCGGAATTGGACTTCAGACAATCGCTTCCTTTCGCCAACCAACCCCTCAGTCGCTGCTCCTTCACTCACACCATCTACCATAGAGGGTCCCTACACCCATGCTCGTCTCTCTTACTCCTCATTCAATTACTCATTTCCTGTCACACCAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCTACTTCATACCATAACTTCCCTCGCTCCCTATCCTCTTTCTCAGTCCAAGCAGGCCCCTACACCCTTCTACAAGATTTCAATGCTTCACTCAACGCCGATGCCGATGATGACCCTAGCCACCCTGACATCTTGTTCAAAGAGTATTGCGTTTACTTTGGAGACGGTGAGAACCTGACTATAACCTTCTTTCCCAGTACTACTGATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCCATGCCCCATTATCTCTACTACACCGATCCTCACTCCACAGAGCAGCCGCAATATGTTGGCACAATGAATCCATATGTCACTGAGCACAAATTTGCTCTCGAGACCATGTTCAGGTTAGTCGTTTCCGCTGAAATTCTTTCCTCAGGGGACACGGGTATGCTCAGAACGTGGAGACCTGACATCAAGTACGTAACTACTCAATATTATCAACCAGTTGATTATGTGAAAATTAAAAACCTGACGTTCATTGCAACCTATAACTACACGGCACCAGACCAAGTGTACAGAACCGTTCGGAGTATGGGACGTAATGGCTCTATCAACATGGGTTTCAGTCTCACATGGCAGCTTCCTGTTGATTCTGGCTTCACCTACATGATACGGTTACACTTTTGCCAGCTTGATCCGAGGGTTAACAACACTGGTGACTTGATTTTCAACATCATCATAGCGGATCAGTTGGCAAGCAACTGGACAGACCTTCTCATGTGGACTGATAATCAGAGGGGTGTACCGGTGGTTAAAGACTACGTAGTTTCCATCTTAGCCCCAGATAATCAGAAAAAGGCATATCTTTCTGTGAAATTACACCCTCACGATAAGAGCTTGATCAAGGACGCACAACTAAACGCAATTGAACTCTTCAAAATCAGCGACCCTACAGGTAATCTCGCTGGGCCGAACCCAGACCTGCCTCCATTATCAAAAACTAAAAAGAGCAGAACCCCTGCCGCCGTTGCAGGGGCAGTTTCAGGTGTTCTTTTGTTGTCCTTTATTGTCGCCTTTTTCCTCATCAAACGCCAGAAGAACGTCGTTGACAACAAGGGTCCCAATAAAAAGGAAGGAACTTCTCGGAGCAGCGGCTTATTACTGATACCGACCGCCCTCTGCCGACAGTTCTCAATGGCCGAAATGAAAGTCGCAACCAACAACTTCGACAAAGTCTTCGAGGTTGGAGTGGGAGGCTTCGGCAACGTGTACAAAGGTCACATCGACAAAGGCTCAACTACTGTCGCAGTCAAAAGGCTTAAACCGGGTTCTCGCCAAGGTATTCGCGAGTTCAAGAACGAGATTCAAATGCTGTCTCAACTCTGTCACCCCAATATCGTTTCCCTAATTGGTTACTGTTACGAGAACAACGAGATGATCCTCGTTTACGATTTCATGAATAACGGCAACCTCTGTGACCATCTCTACGACACTGATAACCCGTCTCTGTCGTGGAAACGTAGGCTCCAGATATGCATAGGTGTTGCACGAGGATTGCATTATCTGCATACAGGTGTGGAGCAGGTGATCATTCACCGTGACGTGAAGAGCAGCAATATCTTGTTGGATGAAAAATGGGTGGCGAAGGTTTCGGATTTCGGATTATCCCGAATTGGGGAGCCCAGTGGTTCTTCGATGAGTATCGTGAGCGTGAACACTGAGGTGAAAGGTAGTATTGGATATTTGGACCCAGAATATTACAAGCGATACCTTTTGACTGAGAAGTCTGACGTGTACTCACTTGGGGTGATGTTGTTGGAGGTGTTATCTGGGAGGCAGCCTTTGCTCCCTGGGGAGGAAAAGCAACGAATTTCACTTGTTAATTGGGCGAAACATTGCTATGAGAAGGGAACTCCAAATGAGATTGTGGATATACAACTCAAGGGCCAGGTAGCACCTCAGTCTCTGCGCAAATTTGTTGAGGTTGCATTCACCTGTTTGCTTGAAGACGGGACTCAACGACCTTCCATGAACGATGTCGTTGAGCTGTTGGAGTTTGCTCTTCAGCTTCAGGATGGTGTTGTTAATGATTTTGCTCCTGAGTGTCGGCAAGTCTTTATAAATATCATGCAAGGATGCGTGAAATATGAAGCAGATGAGCGACCAACAATGGGTGAGGTCTGTTGTTGCAGGAACAAGCAGATATCACAAACATTCATGGTGATTATATCTTAA 2559 0.4619 FAIVCYFDDRLSMDPSCTRTALRTIIFLFLMCCLSFLSTADDIYHPTDLFSISCGSSTNFSTLDTRNWTSDNRFLSPTNPSVAAPSLTPSTIEGPYTHARLSYSSFNYSFPVTPGPKFIRLFFYSTSYHNFPRSLSSFSVQAGPYTLLQDFNASLNADADDDPSHPDILFKEYCVYFGDGENLTITFFPSTTDSYAFINGIEIVSMPHYLYYTDPHSTEQPQYVGTMNPYVTEHKFALETMFRLVVSAEILSSGDTGMLRTWRPDIKYVTTQYYQPVDYVKIKNLTFIATYNYTAPDQVYRTVRSMGRNGSINMGFSLTWQLPVDSGFTYMIRLHFCQLDPRVNNTGDLIFNIIIADQLASNWTDLLMWTDNQRGVPVVKDYVVSILAPDNQKKAYLSVKLHPHDKSLIKDAQLNAIELFKISDPTGNLAGPNPDLPPLSKTKKSRTPAAVAGAVSGVLLLSFIVAFFLIKRQKNVVDNKGPNKKEGTSRSSGLLLIPTALCRQFSMAEMKVATNNFDKVFEVGVGGFGNVYKGHIDKGSTTVAVKRLKPGSRQGIREFKNEIQMLSQLCHPNIVSLIGYCYENNEMILVYDFMNNGNLCDHLYDTDNPSLSWKRRLQICIGVARGLHYLHTGVEQVIIHRDVKSSNILLDEKWVAKVSDFGLSRIGEPSGSSMSIVSVNTEVKGSIGYLDPEYYKRYLLTEKSDVYSLGVMLLEVLSGRQPLLPGEEKQRISLVNWAKHCYEKGTPNEIVDIQLKGQVAPQSLRKFVEVAFTCLLEDGTQRPSMNDVVELLEFALQLQDGVVNDFAPECRQVFINIMQGCVKYEADERPTMGEVCCCRNKQISQTFMVIIS 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01029 852 Gene3D - 239 423 - -
Vimu6g01029 852 Gene3D - 48 207 - -
Vimu6g01029 852 Gene3D Transferase(Phosphotransferase) domain 1 594 802 - -
Vimu6g01029 852 ProSitePatterns Protein kinases ATP-binding region signature. 523 546 IPR017441 GO:0005524
Vimu6g01029 852 Gene3D Phosphorylase Kinase; domain 1 502 593 - -
Vimu6g01029 852 SUPERFAMILY Protein kinase-like (PK-like) 493 795 IPR011009 -
Vimu6g01029 852 FunFam Receptor-like protein kinase FERONIA 594 807 - -
Vimu6g01029 852 FunFam receptor-like protein kinase FERONIA 480 593 - -
Vimu6g01029 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Vimu6g01029 852 Pfam Protein tyrosine and serine/threonine kinase 522 792 IPR001245 GO:0004672|GO:0006468
Vimu6g01029 852 FunFam FERONIA receptor-like kinase 236 423 - -
Vimu6g01029 852 Pfam Malectin-like domain 52 422 IPR024788 -
Vimu6g01029 852 FunFam FERONIA receptor-like kinase 49 207 - -
Vimu6g01029 852 CDD STKc_IRAK 523 793 - -
Vimu6g01029 852 PANTHER OS03G0124300 PROTEIN-RELATED 25 476 IPR046957 GO:0004672
Vimu6g01029 852 ProSiteProfiles Protein kinase domain profile. 517 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01029 852 SMART serkin_6 517 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01029 Vimu-Chr6 11030866 11033602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01029 31 810 Receptor kinase-like Gene Family AT3G51550 43.152 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01029 Malectin_like 3.1e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01029 - - vum:124832507 1502.26