Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01028 ATGGCTGCGGAGCAATTTGTGAACCTGACCATCACAGATAAAACCGATGTTTATTCATTTGGTATGGTTCTATTCGAAGTTGTGAGTGGAGAGAAATGTATAAAATTGTTTAGTGAAGGGGAATTTTTTGGAAGGCCGGTTGAAGAGATAGTTGATCCGAAAATCAAAGGAAAGATTGCACCTGAGTCTTGGCAAGTCTTTATAGATATCATGCAAGGATGCTTGAAATACGAAGTAGATGAGCGACCAACAATGGGTGAGGTAGAGCTGCAACTTGAGCATGCTCTGTCGTTGCAGGAACATGCAGATATGACAAACATCCATGCTGATTATGTTTTATTGTCTAAAACCATTATTAACTTAATGCCTGAGTTAGAAGATGAAGATATCGGTATAACAGAATGA 405 0.3877 MAAEQFVNLTITDKTDVYSFGMVLFEVVSGEKCIKLFSEGEFFGRPVEEIVDPKIKGKIAPESWQVFIDIMQGCLKYEVDERPTMGEVELQLEHALSLQEHADMTNIHADYVLLSKTIINLMPELEDEDIGITE 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01028 134 PANTHER OS07G0166700 PROTEIN 7 99 IPR045272 GO:0004714|GO:0006468
Vimu6g01028 134 Gene3D Transferase(Phosphotransferase) domain 1 1 117 - -
Vimu6g01028 134 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01028 134 SUPERFAMILY Protein kinase-like (PK-like) 1 90 IPR011009 -
Vimu6g01028 134 Pfam Protein tyrosine and serine/threonine kinase 1 90 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01028 Vimu-Chr6 11020254 11020658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01028 4 125 Receptor kinase-like Gene Family AT5G61350 36.691 1.75e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu6g01028 PK_Tyr_Ser-Thr 3.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01028 - - vum:124832507 213.772