Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01025 ATGGAAAGAACTTGCACGCGAGCTGCTTCAGGAACCATCCTCTTCCTTCTCCTGTGGTGGTGCCTCTCTTTCCTTTCCATGGCAGACGTTATTTATCGTCCCACTGACCTCTTTAGCATCAGCTGTGGCTCATCCACCAACTTCTCCACTCTCGACACTCGGAATTGGACTTCAGACAATCACTTTCTCTCTCCAACAAACCCCTCAGTCGCTGCTCCTTCACTAACACCATCTACCATAGAGGGTCCCTACACCCATGCTCGTCTCTCTCACTCACCATTCACTTACTCATTCCCTCTCACACCAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCAACTTCATACCAAAACTTCCCTCGCTCCCTATCCTCTTTCTCAGTCCAAGCAGGCCCCTACACCCTCCTTCACGATTTCAATGCTTCCCTCAACGCCGATGCTGATGATGATCCTAGCCACCCTGACATCTTGTTCAAAGAGTATTGCATCAACCTCCAAGATGCTGACAAGCTCAACATAACCTTCCTTCCTAGCACCACAGATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCCCTTATCTCTACTACACCGATCCTGACGACTCCACAGAGCAGCCGCAATTTGTTGGCACCATGACCACATATGTCGTTGAGAGCAAGTTTGCTCTCGAGACCATGTACAGGTTAAAAGCCGGTGAACATACAATCTCCTCCTCTGAGGACACGGGTATGCTCAGGACTTGGGATGCCGATAGCAAGTACCTAGAGACAAAAAGTGAAGAATCTATTGAGTTTAAGAATCCAACCAATCTGAGCTTCACTAAGAAGATTCCTAACTACACGGCACCAGACCAAGTGTTCCGATCTGTAAGGAATATGGGAAGAGATGCCTCTATCAACATGAGGAACAATATCACTTGGCAACTTACCGTTGATTCCGGCTTTACCTACTTGCTAAGGTTATACTTTTGTGAGCTTAACCCGAGTGTTGACGAGGCTGGTGTCCTGAGATTTTTCATCTTCATACATGATCAGTTGGCTACCGATTGGGCAGACGTTTTCATGTGGACGAAACAGTGGGGTGTGCCCGTGGTTAAAGAGTATGTAGTTATCATCTCAGAGAATCCGAAAAAAGTTAACCTTTCGCTAAAAATGCATCCTCACCCTGAAAGCATTATCCAGGACGCACAAATAAATGCAATCGAAATCTTCAAAATCAGCAATTATAGAAGTAGTCTCGCTGGACCAAATCAGGACCCTCCTCTACAAACCGCAGTGGTATCCCGTCAAGGCTCAAACAAGAAAAAGGGAGCCTCCAAGAAAACCCTCACCGCCGTGACAGGGACAGTTTTCGGTGTCCTTTTGCTCTCTTTTATTGTCACTTTCTTCTTCGTCAAACGCAAGAAAAACATCGGCATTGAAAGTAAGAAAGTGGGAACTTCTCGCCGGGATGTGTCATCATCGCTACCAACCAACCTCTGCCGTCACTTCTCAATCGCAGAAATCAGAGCCGCCACCAACAACTTCGACAAACTTTTCGTCGTTGGAGTGGGAGGCTTCGGCGACGTATACAAAGGCTACATCGACGACGGCTCAACAACTGTCGCAATTAAAAGGCTCAAACCCGGTTCTCAGCAAGGTCTGAACGAGTTCATGAACGAGATCGAAATGCTCTCTCAACTTCGACATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGATCCTCGTTTACGATTTCATGGATCGTGGAACCCTCCGTGACCATCTCTACGGGACCGATAACCCTCCGCTCTCATGGAACCAAAGGCTTCAGATATGCATAGGGGCCGCACGAGGACTGCATTATCTACATACAGGTGCAAAACAGATGATCATTCACCGTGACGTGAAGAGCACAAACATCTTGTTGAATGAAAAATGGGTGGCGAAGGTTTCAGACTTTGGGTTATCTCGAATTGGGCCCACGGGTTCTTCAATGACCCATGTGAGCACAAAGGTGAAAGGCAGTGTTGGGTATTTGGATCCGGAGTACTACAAACGACAGCGTTTGACGGAGAAGTCGGACGTGTACTCGTATGGGGTGGTGCTCTTGGAGGTATTGTGTGGGAGGCAGCCTTTGCTCCGAACGGTGGAGAAGAAACAGGTGTCCCTCGTGGATTGGGCGAAGCATCGGCATGAGAAGGGATCTCTGGGTGAGATTGTGGATCCAGCACTGAAGGGTCAGATAGCACCTCACTGTTTGCGTAAATTTGGTGACGTTGCGTTGAGTTGTTTGCTTGAGGATGGGAGTCAGCGACCTTCCATGAACGACGTCGTTGGGGTGTTAGAGTTTGTTCTGCAGCTTCAGCTTCAGGAGACTGCTCATAGTGATGTAGTGTGGGAGAGTGGTGGGGATTATGAAAGCAGCACAACTGAGGACATGTTTAGCAGTTCCCATAGTAATAGCAGTGGATTGAACTCTACAAGCTACGGGAATAAGGAATCGGACAGGTTGATCTCTGAGAATGTTTTTTCTGAGCTTAAGGATCCAAAGGGACGCTGA 2571 0.4796 MERTCTRAASGTILFLLLWWCLSFLSMADVIYRPTDLFSISCGSSTNFSTLDTRNWTSDNHFLSPTNPSVAAPSLTPSTIEGPYTHARLSHSPFTYSFPLTPGPKFIRLFFYSTSYQNFPRSLSSFSVQAGPYTLLHDFNASLNADADDDPSHPDILFKEYCINLQDADKLNITFLPSTTDSYAFINGIEIVSMPPYLYYTDPDDSTEQPQFVGTMTTYVVESKFALETMYRLKAGEHTISSSEDTGMLRTWDADSKYLETKSEESIEFKNPTNLSFTKKIPNYTAPDQVFRSVRNMGRDASINMRNNITWQLTVDSGFTYLLRLYFCELNPSVDEAGVLRFFIFIHDQLATDWADVFMWTKQWGVPVVKEYVVIISENPKKVNLSLKMHPHPESIIQDAQINAIEIFKISNYRSSLAGPNQDPPLQTAVVSRQGSNKKKGASKKTLTAVTGTVFGVLLLSFIVTFFFVKRKKNIGIESKKVGTSRRDVSSSLPTNLCRHFSIAEIRAATNNFDKLFVVGVGGFGDVYKGYIDDGSTTVAIKRLKPGSQQGLNEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGTLRDHLYGTDNPPLSWNQRLQICIGAARGLHYLHTGAKQMIIHRDVKSTNILLNEKWVAKVSDFGLSRIGPTGSSMTHVSTKVKGSVGYLDPEYYKRQRLTEKSDVYSYGVVLLEVLCGRQPLLRTVEKKQVSLVDWAKHRHEKGSLGEIVDPALKGQIAPHCLRKFGDVALSCLLEDGSQRPSMNDVVGVLEFVLQLQLQETAHSDVVWESGGDYESSTTEDMFSSSHSNSSGLNSTSYGNKESDRLISENVFSELKDPKGR 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01025 856 Pfam Protein tyrosine and serine/threonine kinase 519 783 IPR001245 GO:0004672|GO:0006468
Vimu6g01025 856 Pfam Malectin-like domain 40 410 IPR024788 -
Vimu6g01025 856 PANTHER OS03G0124300 PROTEIN-RELATED 14 479 IPR046957 GO:0004672
Vimu6g01025 856 FunFam FERONIA receptor-like kinase 225 411 - -
Vimu6g01025 856 MobiDBLite consensus disorder prediction 804 856 - -
Vimu6g01025 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vimu6g01025 856 SUPERFAMILY Protein kinase-like (PK-like) 488 788 IPR011009 -
Vimu6g01025 856 ProSitePatterns Protein kinases ATP-binding region signature. 519 542 IPR017441 GO:0005524
Vimu6g01025 856 SMART serkin_6 513 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01025 856 MobiDBLite consensus disorder prediction 842 856 - -
Vimu6g01025 856 MobiDBLite consensus disorder prediction 806 841 - -
Vimu6g01025 856 FunFam Receptor-like protein kinase FERONIA 590 805 - -
Vimu6g01025 856 Gene3D Phosphorylase Kinase; domain 1 498 589 - -
Vimu6g01025 856 CDD STKc_IRAK 528 786 - -
Vimu6g01025 856 FunFam FERONIA receptor-like kinase 37 195 - -
Vimu6g01025 856 FunFam receptor-like protein kinase FERONIA 477 589 - -
Vimu6g01025 856 Gene3D - 36 194 - -
Vimu6g01025 856 Gene3D - 225 412 - -
Vimu6g01025 856 Gene3D Transferase(Phosphotransferase) domain 1 590 805 - -
Vimu6g01025 856 ProSiteProfiles Protein kinase domain profile. 513 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01025 Vimu-Chr6 10999796 11003010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01025 23 856 Receptor kinase-like Gene Family AT3G51550 44.921 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01025 Malectin_like 2.6e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01025 - - vun:114186088 1222.22