Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01024 ATGGCAGACGTTATTTATCGTCCCACTGACCTCTTCAGCATCAGTTGTGGCTCATCCACCAACTTCTCCACTCCCGACACTCGGAATTGGACTTCAGACAATCACTTCCTCTCTCCAACAAACCACTCAGTCGCTGCTCCTTCACTAACACCATCTACCATAGAGGGTCCCTACACCCATGCTCGTCTCTCTCACTCACCATTCACTTACTCATTCCCTCTCACACCAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCTACTTCATACCATAACTTCCCTCGCTCCCTATCCTCTTTCTCAGTCCAAGCAGGCCCCTACACCCTCCTTCAAGATTTCAATGCTTCCCTCAACGCCGATGCTGATGATGATCCTAGCCACCCTGACATCTTGTTCAAAGAGTATTGCATCAACCTCCAAGATGCTGACAAGCTCAACATAACCTTCCTTCCTAGCACCACAGATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCCCTTATCTCTACTACACCGATCCTGACGACTCCACAGAGCAGCCGCAATTTGTTGGCACCATGACCACATATGTCGTTGAGAGCAAGTTTGCTCTCGAGACCATGTACAGGTTAAAAGCCGGTGAACATACAATCTCCTCCTCTGAGGACACGGGTATGCTCAGGACTTGGGATGCCGATAGCAAGTACCTAGAGACAAAAAGTGAAGAATCTATTGAGTTTAAGAGTACAACTAATCTGAGCTTCACTAAGAAGATTCCTAACTACACGGCACCAGACCAAGTATTCCGATCAGTAAGGAATATGGGAAGAGATGCCTCTATCAACATGAGAAACAACATCACTTGGCAACTTACCGTTGATTCCGGCTTCACCTACTTGCTAAGGTTATACTTTTGTGAGCTTAACCCGAGAATTGACGAGGCTGGTGTCCTGAGATTCTTCATCTTCATACATGATCAGTTGGCTACCGATTGGGCAGACGTTTTCATGTGGACGAAACAGTGGGGTGTTCCCGTGGTTAAAGAGTATGTAGTTATCATCTCAGAGAATCCGAAAAAAGTTAACCTTTCGCTAAAAATGCATCCTCACCCTAAAAGCATTATCCAGGACGCACAAATAAATGCAATTGAAATCTTCAAAATCAGCAATTATAAAGGTAGTCTCGCTGCACCAAATCAGGACCCTCCTCTACAAACCGCAGTGGTATCCCGTCAAGGCTCAAACAATAAAAACGGAGCCTCCAAGAAAACCCTCGCCGCCGTGACAGGGACAGTTTTCGGTGTCCTTTTGCTCTCTTTTATTGTCGCTTTCTTCTTCGTCAAACGCATGGAGAACATCTCCGTTGAAAGTAAGAAAGAGGTAAATTCTCGCCGGGATGGGTCATCATCACTACCAACCAACCTCTGCCGTCACTTCTCAATCTCAGAAATCATTGCGGCTACCAATAACTTCGACGAACTCTTCGTCGTTGGAGTGGGAGGCTTTGGCAACGTGTACAAAGGCTACATCGACGATGCAACACCTGTGGCAATCAAAAGGCTCAAACCGGGTTCTCAGCAAGGTCTGAACGAGTTCATGAACGAGATCGAAATGCTCTCTCAACTTCGACATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGATCCTCGTTTACGATTTCATGGATCGTGGAGCCCTCCGTGATCATCTCTACGACACCGATAACCCTTTGCTTTCATGGAAGCAAAGGCTTCAGATATGCATCGGGGCGGCTCGAGGATTGCATTATCTGCATACAGGTGCGAAACAGATGATCATTCACCGTGACGTGAAGAGCACAAACATCTTGTTGGATGAAAAATGGGTGGCGAAAGTTTCAGACTTCGGATTGTGTCGAGTTGGGCCCACAGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAGGGCAGTGTTGGGTATTTAGATCCGGAGTATTACAAACGACAGCGTTTGACGGAGAAGTCGGACGTGTACTCGTACGGAGTGGTGCTCTTAGAGGTATTGTGTGGGAGGCAGCCTTTGCTCCGAACGGTGGAGAAGCAACAGGTGTCCCTCGTGGATTGGGCGAAGCATCGGTATGAGAAGGGATCTCTGAGTGAGATTGTGGATCCAGCACTGAAGGGTCAGATAGCACCTCTCTGTTTGCGCAAATTTAGTGAGGTTGCGATGAGCTGTTTACTTGAGGATGGGAGTCAGCGACCTTCCATGAACGACGTCGTTGGGGTGTTAGAGTTTGTTCTGCAGCTTCAAGTTCAGGAGGACAGTGCTCATGGTGATGTAGTGTGGGAGAGTGGCGGGGACTATGAAGGCAGTACAACCGAGGACATGTTTAGCAGCTCCCATAGTAATAGCAGTGTATTGAACACTACAAGCTACGGGAATAAGGAATCTGATAGGTTAATCGCTGAGAATGTTTTTTCTGAGCTTAAGGATCCAAAGGGACGCTGA 2493 0.4753 MADVIYRPTDLFSISCGSSTNFSTPDTRNWTSDNHFLSPTNHSVAAPSLTPSTIEGPYTHARLSHSPFTYSFPLTPGPKFIRLFFYSTSYHNFPRSLSSFSVQAGPYTLLQDFNASLNADADDDPSHPDILFKEYCINLQDADKLNITFLPSTTDSYAFINGIEIVSMPPYLYYTDPDDSTEQPQFVGTMTTYVVESKFALETMYRLKAGEHTISSSEDTGMLRTWDADSKYLETKSEESIEFKSTTNLSFTKKIPNYTAPDQVFRSVRNMGRDASINMRNNITWQLTVDSGFTYLLRLYFCELNPRIDEAGVLRFFIFIHDQLATDWADVFMWTKQWGVPVVKEYVVIISENPKKVNLSLKMHPHPKSIIQDAQINAIEIFKISNYKGSLAAPNQDPPLQTAVVSRQGSNNKNGASKKTLAAVTGTVFGVLLLSFIVAFFFVKRMENISVESKKEVNSRRDGSSSLPTNLCRHFSISEIIAATNNFDELFVVGVGGFGNVYKGYIDDATPVAIKRLKPGSQQGLNEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGALRDHLYDTDNPLLSWKQRLQICIGAARGLHYLHTGAKQMIIHRDVKSTNILLDEKWVAKVSDFGLCRVGPTGSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSYGVVLLEVLCGRQPLLRTVEKQQVSLVDWAKHRYEKGSLSEIVDPALKGQIAPLCLRKFSEVAMSCLLEDGSQRPSMNDVVGVLEFVLQLQVQEDSAHGDVVWESGGDYEGSTTEDMFSSSHSNSSVLNTTSYGNKESDRLIAENVFSELKDPKGR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01024 830 FunFam FERONIA receptor-like kinase 199 385 - -
Vimu6g01024 830 PANTHER OS03G0124300 PROTEIN-RELATED 6 448 IPR046957 GO:0004672
Vimu6g01024 830 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Vimu6g01024 830 Gene3D Transferase(Phosphotransferase) domain 1 563 777 - -
Vimu6g01024 830 Pfam Malectin-like domain 14 384 IPR024788 -
Vimu6g01024 830 CDD STKc_IRAK 502 759 - -
Vimu6g01024 830 FunFam FERONIA receptor-like kinase 11 169 - -
Vimu6g01024 830 Pfam Protein tyrosine and serine/threonine kinase 493 756 IPR001245 GO:0004672|GO:0006468
Vimu6g01024 830 FunFam receptor-like protein kinase FERONIA 449 562 - -
Vimu6g01024 830 FunFam Receptor-like protein kinase FERONIA 563 776 - -
Vimu6g01024 830 SMART serkin_6 487 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01024 830 MobiDBLite consensus disorder prediction 786 808 - -
Vimu6g01024 830 SUPERFAMILY Protein kinase-like (PK-like) 463 761 IPR011009 -
Vimu6g01024 830 ProSiteProfiles Protein kinase domain profile. 487 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01024 830 Gene3D Phosphorylase Kinase; domain 1 447 562 - -
Vimu6g01024 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Vimu6g01024 830 Gene3D - 10 168 - -
Vimu6g01024 830 Gene3D - 199 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01024 Vimu-Chr6 10990973 10993465 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01024 6 830 Receptor kinase-like Gene Family AT3G51550 45.176 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01024 Malectin_like 5.4e-41 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01024 - - vun:114186088 1194.87