Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01022 ATGAGGGAGCGTGGACTTGTAGTTCCCATGCGAAGACTTGAAATCCCTGCTTCCAATGAAATAGATGACATGAAAAACACAGCAATGATATTAACAGAAATCTTGAGAATTTTATCGTCTTTAAACTCTGTTTTGATGCTGTTCGTTGCTTCCATGGACATAACTAGCAAAGAAACCGCGTTAGGAACCTTCCTCCTCCTGTTGCTGTGCCTCCCTTACCTTTCCGTGGCTGCTATTTATCATCCTAGTGAACAATTGAGCATCAACTGTGGCTCAACCAGCAGTGTCATGTACGATGGTCGGAATTGGACTACAGATCTAAATTTCCTCCGAGAAAACCACAACCAATCTGTTGCTGCTCTTCCAACGGCAGTATCTCCCAAAGAGGGTCCTTACACCCATGCTCGTCTTTCTCGCACCCAATTCACCTACTCATTCCTTGTAAATCCAGGTCCTAAGTTCCTTCGCCTTTTCTTCTACTCTACTGCTTATCCAAATTTCGAACGCTCCCAAGCCTGCTTCTCAGTCAAAGCAGGCCCATACACCCTCCTTCAATATTTCAATGTTTCCCTTAATGCGGATGTCGATCCTGCCAGCTCCGGCATCTTGTTCAGAGAATATTCCATCAACCTCAAAGACGGTTGGCTAAACGTAACATTCATTCCAAATACCACAGCCCAGAATCCAGATTCCTACGCTTTCATCAATGGGATCGAGGTTGTTTCAATGCCCTCTTATCTCTACTACACTAATTCTAACGTCGACAACGCTGACTATCCCAAACTTGTTGGAGGAGAATCATATCAAATTGAAAACAATTTGGCTCTGGAAACAAAGTACCGGCTAAGACTGGGGGACCGAGATATCCCCGCCGCAGAGGATACGGGTATGCTCAGAAAGTGGGATGTCCATAATGAATATATAACTAATCCAGGTGTAGAATCTTTTGATGTTGACAATACAACCAAACTGAACTTTAATAAGACTCCTGATTACACTGCACCAGACCCGGTCTACCGATCCTTAGCGAGTATGGGAGGTAACGCCTCTGTGAACATGGGGTTCAACCTCACATGGCAGCTTCCTGTTGATCCTGGTTTCACCTACATGCTACGGTTACACTTTTGCCAGCTTAACCCGAAAGTTATTGGGTCTGGTTACCAGATCTTCCTCATCTACATTCAGGATAATTTGGTTGAAGAGAGGGCAGACATTTTCTCTTGGAGCGGTAAACTGAAGGGTGTACCAGTGGTTAGAGACTATGCAGTCATCATCTCAGCCCCAGATCATCAGAAAAAGGCAAATCTTTCTGTGAAATTGCACCCTCACCGTGAAAGCTTGATCAAGGACGCACAACTAAACGCAATTGAACTCTTTAAAATCAGCGACACAGAAGGTAATCTTGCTGGGCCGAACCCAGACCCTCGTATACAAGCCACGGAGATTTTCCATGAAAACTCAATCAAGAAAAGAAGAAGCACCACAAGAACCCTAGCCGCCGTTGCTGGTGCAGTTTCTGGTGTCATTTTACTCTCCTTTATCATCGTTTTCTTTATCATCAAACGCAAGAAAAATGTTGCTTTCAACAACGGTTCCAATAAAAAAGACGAAACTTCTCACGGGGGAGGCTCATCATCGCTACCAACCAACCTCTGCCGTCACTTCACAATTGCAGAAATAGCGGAAGCTACCAATAACTTCGACGAACTCTTCATCGTTGGAGTGGGAGGCTTTGGCAACGTGTACAAAGGCTACATCGACGACGGTTCAACACCTGTGGCAATCAAAAGGCTAAAACCGGGTTCTCGGCAAGGTCTCAACGAGTTCATGAACGAGATCGAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGCTACGAGAGCAACGAGATGATCCTCGTTTACGATTTCATGGATCGTGGAACACTCAGTGATCATCTCTACGGATCCAATAATCCTCCGCTCTCGTGGAAGCAAAGGCTTCAAATATGCATTGGTGCCGCACGAGGACTGCATTATCTACATACAGGTGCGAAACAGATGATTATTCACCGTGACGTGAAGAGCACGAACATTTTGTTGGATGAAAAATGGGTGGCGAAGGTTTCAGACTTTGGTTTATCTCGAATTGGACCCACGGGTTCTTCAATGACCCATGTGAGCACTCAGGTGAAGGGCAGTGTTGGGTATTTAGACCCGGAGTATTACAAACGACAGCGTTTGACGGAGAAATCGGACGTGTACTCGTATGGGGTGGTGCTCTTGGAGGTATTGTGCGGGAGGCAGCCTTTGCTCCGAATGGTGGAGAAGCGACAGGTGTCACTAGTGGATTGGGCGAAGCATCGGTATGAGAAGGGGTTTCTGGGTGAGATTGTGGATCCAGCACTGAAGGGCCAGATAGCACCTCATTGTTTGCGCAAATTTGGTGAGGTTGCGTTGAGCTGTTTGCTTGAGGATGGGGCTCAGCGACCTTCCATGAACGACGTCGTTGGGGTGTTGGAGTTTGTTCTTCAACGTCACCTTCAGGATGGTGCTAATGTCATTGCCGTGTTGGAAAGTGGTGGGGATTATGAAGACAGTACTACTGAGGACATGTTTAGCAGTAGCCATAGTAGCGTGCATGTTTCGGACTACAGTAACAGCAGTGGATTGAACTCTACAAGCTACCCCAGTAAGGAATCTGACAGGTTGTTCTCAGAACCTGTTTTCTCCGAGATTAAGGATCCAAAGGGACGATGA 2757 0.4621 MRERGLVVPMRRLEIPASNEIDDMKNTAMILTEILRILSSLNSVLMLFVASMDITSKETALGTFLLLLLCLPYLSVAAIYHPSEQLSINCGSTSSVMYDGRNWTTDLNFLRENHNQSVAALPTAVSPKEGPYTHARLSRTQFTYSFLVNPGPKFLRLFFYSTAYPNFERSQACFSVKAGPYTLLQYFNVSLNADVDPASSGILFREYSINLKDGWLNVTFIPNTTAQNPDSYAFINGIEVVSMPSYLYYTNSNVDNADYPKLVGGESYQIENNLALETKYRLRLGDRDIPAAEDTGMLRKWDVHNEYITNPGVESFDVDNTTKLNFNKTPDYTAPDPVYRSLASMGGNASVNMGFNLTWQLPVDPGFTYMLRLHFCQLNPKVIGSGYQIFLIYIQDNLVEERADIFSWSGKLKGVPVVRDYAVIISAPDHQKKANLSVKLHPHRESLIKDAQLNAIELFKISDTEGNLAGPNPDPRIQATEIFHENSIKKRRSTTRTLAAVAGAVSGVILLSFIIVFFIIKRKKNVAFNNGSNKKDETSHGGGSSSLPTNLCRHFTIAEIAEATNNFDELFIVGVGGFGNVYKGYIDDGSTPVAIKRLKPGSRQGLNEFMNEIEMLSQLRHLHLVSLIGYCYESNEMILVYDFMDRGTLSDHLYGSNNPPLSWKQRLQICIGAARGLHYLHTGAKQMIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTGSSMTHVSTQVKGSVGYLDPEYYKRQRLTEKSDVYSYGVVLLEVLCGRQPLLRMVEKRQVSLVDWAKHRYEKGFLGEIVDPALKGQIAPHCLRKFGEVALSCLLEDGAQRPSMNDVVGVLEFVLQRHLQDGANVIAVLESGGDYEDSTTEDMFSSSHSSVHVSDYSNSSGLNSTSYPSKESDRLFSEPVFSEIKDPKGR 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01022 918 FunFam FERONIA receptor-like kinase 274 462 - -
Vimu6g01022 918 SUPERFAMILY Protein kinase-like (PK-like) 543 842 IPR011009 -
Vimu6g01022 918 Gene3D Transferase(Phosphotransferase) domain 1 644 856 - -
Vimu6g01022 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Vimu6g01022 918 MobiDBLite consensus disorder prediction 866 900 - -
Vimu6g01022 918 MobiDBLite consensus disorder prediction 866 918 - -
Vimu6g01022 918 FunFam FERONIA receptor-like kinase 85 244 - -
Vimu6g01022 918 PIRSF TyrPK_CSF1-R 472 526 - -
Vimu6g01022 918 PIRSF TyrPK_CSF1-R 70 141 - -
Vimu6g01022 918 PIRSF TyrPK_CSF1-R 571 658 - -
Vimu6g01022 918 PIRSF TyrPK_CSF1-R 644 779 - -
Vimu6g01022 918 PIRSF TyrPK_CSF1-R 807 902 - -
Vimu6g01022 918 Pfam Protein tyrosine and serine/threonine kinase 573 837 IPR001245 GO:0004672|GO:0006468
Vimu6g01022 918 FunFam receptor-like protein kinase FERONIA 529 643 - -
Vimu6g01022 918 Gene3D Phosphorylase Kinase; domain 1 552 643 - -
Vimu6g01022 918 ProSiteProfiles Protein kinase domain profile. 567 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01022 918 CDD STKc_IRAK 573 840 - -
Vimu6g01022 918 MobiDBLite consensus disorder prediction 904 918 - -
Vimu6g01022 918 Gene3D - 274 462 - -
Vimu6g01022 918 Gene3D - 85 244 - -
Vimu6g01022 918 FunFam Receptor-like protein kinase FERONIA 644 858 - -
Vimu6g01022 918 ProSitePatterns Protein kinases ATP-binding region signature. 573 596 IPR017441 GO:0005524
Vimu6g01022 918 SMART serkin_6 567 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01022 918 PANTHER OS03G0124300 PROTEIN-RELATED 63 526 IPR046957 GO:0004672
Vimu6g01022 918 Pfam Malectin-like domain 88 461 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01022 Vimu-Chr6 10971665 10974805 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01022 77 918 Receptor kinase-like Gene Family AT3G51550 45.260 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01022 Malectin_like 2.2e-32 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01022 - - vun:114186088 1221.45