Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01017 ATGCAGGAGTTCATGAACGAAATCGAAATGCTCTCACAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGTTACGAGAACGGCGAGATGATACTTATTTATGATTTCATGGAACGTGGAACCCTCCGCGACCATCTCTACGGCTCTGATAATCAGTCCTTGACGTGGAAGCAAAGGGTCCAGATCTGCATAGGTGCTGCACGAGGGCTCCATTATCTGCATACAGGGGCAAAGCACGTCATCATTCACCGCGATGTGAAGAGTACCAATATTTTATTGGATGAAAAGTGGGTGGCCAAAGTTTCAGACTTCGGGTTATCCAGAATTGGGCCCACGAGTTCTTCAATGACCCATGTGAGTACCCAGGTGAAGGGCAGTATTGGGTATTTAGACCCGGAGTATTATAAACGACAGCGGTTGTCGGAGAAGTCTGACGTGTACTCGTTTGGGGTTGTGTTGTTGGAGGTATTGTGTGGGAGGCAGCCTTTG 495 0.4788 MQEFMNEIEMLSQLRHLHLVSLIGYCYENGEMILIYDFMERGTLRDHLYGSDNQSLTWKQRVQICIGAARGLHYLHTGAKHVIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTSSSMTHVSTQVKGSIGYLDPEYYKRQRLSEKSDVYSFGVVLLEVLCGRQPL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01017 165 Gene3D Transferase(Phosphotransferase) domain 1 40 165 - -
Vimu6g01017 165 PANTHER OS07G0166700 PROTEIN 2 163 IPR045272 GO:0004714|GO:0006468
Vimu6g01017 165 SMART serkin_6 2 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01017 165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 83 95 IPR008271 GO:0004672|GO:0006468
Vimu6g01017 165 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Vimu6g01017 165 ProSiteProfiles Protein kinase domain profile. 1 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01017 165 Pfam Protein tyrosine and serine/threonine kinase 2 164 IPR001245 GO:0004672|GO:0006468
Vimu6g01017 165 SUPERFAMILY Protein kinase-like (PK-like) 2 164 IPR011009 -
Vimu6g01017 165 FunFam Os07g0541700 protein 39 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01017 Vimu-Chr6 10918438 10918958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01017 1 165 Receptor kinase-like Gene Family AT3G51550 75.758 1.40e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01017 PK_Tyr_Ser-Thr 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01017 - - gmx:100305394 312.768