Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01014 ATGTTTAACGGTTCTCTCAATGATCACCTTCATCATACAAACAATCACAAATTTGTTCCACTTTCGTGGGAAAGGAGGCTTCGAATTTGCATAGGTGTTGCACGTGGATTGCACTATCTACACACAGGAGGCAGGTGTTCTGTGATACACAATTTTTTCAAAACACAGTACATCCTTTTGGATCAAAACTGGGAGCCTAAAATTTCTGGTTTACTGTTGTCCAAAAGGGGAGCCGTCGATGTTGCAAGTTCATCTCTTGTTGCGAGAAACCATGATACTTTCGCATATTGTGATCCTGAGTATGCAGCCTCTGGCATCTTTACTGTGAAATCAAATGTGTTTTCATTTGGTGTGGTTCTATTGGAAGTTGTGAGTGGTGTGAAGAACCCTAATTATTCAGTGGAGTTACATGCAGAAAAAATAGTTGATCCGTTTATTAAGTCCAAAATCGCTCCAGATTGTTGGAAAACGTTCATTGATATCACTGAGAGGTGCTTGCATAAACAAGGAACGGAACTACCAAACATGGGCGAAGTGGAGATACAGCTTGAGCTTGCGCTTCAATTGCAGCAGAAATCTCAAACCTATGTTGACTGCAATCTTGATTTTGTCCAAACTGTTTAA 624 0.4038 MFNGSLNDHLHHTNNHKFVPLSWERRLRICIGVARGLHYLHTGGRCSVIHNFFKTQYILLDQNWEPKISGLLLSKRGAVDVASSSLVARNHDTFAYCDPEYAASGIFTVKSNVFSFGVVLLEVVSGVKNPNYSVELHAEKIVDPFIKSKIAPDCWKTFIDITERCLHKQGTELPNMGEVEIQLELALQLQQKSQTYVDCNLDFVQTV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01014 207 SUPERFAMILY Protein kinase-like (PK-like) 3 190 IPR011009 -
Vimu6g01014 207 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01014 207 Gene3D Transferase(Phosphotransferase) domain 1 2 199 - -
Vimu6g01014 207 SMART tyrkin_6 1 183 IPR020635 GO:0004713|GO:0006468
Vimu6g01014 207 Pfam Protein tyrosine and serine/threonine kinase 2 180 IPR001245 GO:0004672|GO:0006468
Vimu6g01014 207 PANTHER OS07G0166700 PROTEIN 1 190 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01014 Vimu-Chr6 10905282 10905935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01014 1 194 Receptor kinase-like Gene Family AT3G51550 41.706 1.23e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01014 PK_Tyr_Ser-Thr 7.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01014 - - pvu:PHAVU_008G031100g 337.421