Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01010 ATGGACCCAACTTGCACACGAACTGCTTTAAGAACCACTCTCGTCCTCTTCCTTATGTGCTGCCTCTCTTTCCTTTCCACGGCAGACGATATTTATCGTCCCACTGACCTATTCAGCGTCAGCTGTGGCTCATCCACCAACTTCTCCACTCAAGACACTCGGAATTGGACTTCAGACAATCACTTCCTCTCACCAACCAACCTCTCAGTCGCTGCTCCTTCACTAACACCATCTACCATAGAGGGTCCCTACACCCATGCTCGTCTCTCTCACTCACCATTCACTTACTCATTCCCTCTCACACCAGGCCCCAAGTTCATTCGTCTCTTTTTCTACTCTACTTCATACCAAAACTTCCCTCGCTCCCTAGCCTCTTTCTCAGTTCAAGCAGGCCCCTACACCCTCCTTCAAGATTTCAATGCTTCCCTCAACGCCGATGCTGATGATGATCCTAGCCACCCTGACATCTTGTTCAAAGAGTATTGCATCAACCTCCAAGATGCTGACAAGCTCAACATAACCTTCCTTCCTAGCACCACAGATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCCCTTATCTCTACTACACCGATCCTCACTCCACAGAGCAGCCGCAATATGTTGGCACAATGACCCCGTATGTCGTCGAGAACAAGTTTGCTCTCGAGACCATGTACAGGTTAGTCGTTGGAAATGAAATTCCCCCTTCAAGGGACACGGGTATGCTCAGAAGGTGGTTACCTGACATCAAGTACGTAACTACTCAATATCAACAATCAGTTGATTATGGGAAAATTAAAAACCTGACGTTCAATTCAACCTATAACTACACGGCACCAGATCAAGTGTACAGAACCGTTCGGAGCATGGGACTTAATGGCTCTATCAACATGGGTTTCAATCTCACATGGCAGCTTTCCGTTGATTCAGGCTTCTTCTACATGCTACGGTTACACTTTTGCCAACTTGATCCGTGGGTTAACAACACTGGTGACCTGATTTTCATCATCCTCATAGCGGATCAGTTGGCCAGCAATTGGGCAGACGTTCTCATGTGGACTGGTAATCGGAAGGGTGTACCGGTTGTTAAAGACTACGTACTTTTCATACAAGGGAATCTTGACAAAACAAATCTATCAGTGAAACTGCATCCTCGCCCTGCAAGCTGGATCAAAGACGCGGTTATCAACGCAATTGAAGTCTTCAAAATCAGCAGCTCAACAGGTAGTCTCGCTGGACAAAACCCAAACCCTCCTCCTCAAAAGCCCAAGGTTCCCCTTAGCTCAAACAAGAAAAGTAGCGTCTTTACGAAAAGCCGAGAAGCCATACTAGGAGCAGTTGCAGGTGTCCTTTTGCTCTCTTCTATTGTTGTTTTCTTCCTCCTCAAATGCAAAAGGAATATGGCCGTTGAAAGTGGTTTCAGCAAAAAGGGCGGAACTTCTCGCGGGGGTGGCTCATCGTCACTGCCAACCAACCTCTGCCGCTACTTCTCCATAGCAGAAATCAGAGCCGCCACCGATAACTTCAACGAACAATTGGTGGTTGGCGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACGTAGATGAGGGTTCAGTACCTGTCGCAATCAAAAGGCTCAAACCCGGTTCTCAGCAAGGTATGCAGGAGTTCATGAATGAAATCGAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTAATCGGTTACTGTTACGAGAACACCGAGATGATACTCATTTATGATTTCATGGAACGCGGAACCCTCCGGGACCATCTCTACGGTTCTGATAATCAGTCCTTGTCGTGGAAGCAAAGGGTCCAGATTTGCATAGGTGCTGCAGGAGGGCTCCACTATCTGCATACAGGTGCAAAGCACGTCATCATTCACCGCGATGTGAAGAGTACCAATATTTTATTGGATGAAAAATGGGTAGCCAAAGTTTCAGACTTCGGGTTATCCAGAATTGGGCCCACGAGTTCTTCAATGACCCATGTGAGCACCCAGGTGAAGGGCAGTGTTGGGTATTTAGACCCGGAGTATTATAAACGACAGCGTTTGTCGGAGAAATCTGACGTGTACTCGTTTGGGGTTGTGCTGTTGGAGGTATTATGTGGGAGGCCGCCTTTGCTCCGTATGGCGGAGAAGCAACAGGTGTCTCTCGTTGATTGGGCAAAACATAGATATAAGGAGGGGTGTTTGGGTGAGATTGTGGATCCAGCACTGAAGGGTCAGATAACACCTCAGTGTTTGCAAAAATTTGGAGAGGTGGCGTTGACCTGTTTGCTGGAGGATGGTTCTCAAAGGCCTTCCATGAACGTCATCGTTGGAATGCTGGAACTTGTTCTGCAGCTTCAGGAGGATAGTGCTAAAAATATAATGATGATGGACACTGGTGGGGGTTATGAAGAAGATAGTGAGGACATGTTTAGCAGTAGTCATTACAGTGTAGAACTTACAGATTATAGTAATAGCACTAGATGTAACACCTCAGGCAATATAGATGATAGCTATGGGAGCAAGCAATCTGACAGGAGGCTTCGAATTTGCATAGGTGTGGCACGTGGATTGCACTATCTACACACAGGAGGCAGGCAGGGGGCTTTTGATGTTGCAAGTTCATCTTTTGTAGCGAGAAACCATGATATTTTCGCATATTGTGATCCTGCAGCCTCTGGCATCTTTACTGTGAAATCAAATGTGTTTTCATTTGGTGTTGTTTTATTGGTTGTTGTGAGTGCAAAGCAAGCGCGAGATTTATACTTGGAACGTGTAAACAACCCGAATTATTCAGTGGAGTTACATGCAGAAAAAATAGTTGATCCGTTTATTAAGTCCAAAATTGGTCCAGATTGTTGGAAAACGTTCATTGACATCGCTGAGAGGTGCTTGCATAAACAAGGAACGGAACGACTAGACATGGTCGAAGTGGAGATACAGCTTGAGCTTGCGCTTCAATTGCAGCAGAAATCCCAAACCTACGTTGACTGCAATCTTGATGATTTTGTCCATACTGTTTAA 3039 0.4623 MDPTCTRTALRTTLVLFLMCCLSFLSTADDIYRPTDLFSVSCGSSTNFSTQDTRNWTSDNHFLSPTNLSVAAPSLTPSTIEGPYTHARLSHSPFTYSFPLTPGPKFIRLFFYSTSYQNFPRSLASFSVQAGPYTLLQDFNASLNADADDDPSHPDILFKEYCINLQDADKLNITFLPSTTDSYAFINGIEIVSMPPYLYYTDPHSTEQPQYVGTMTPYVVENKFALETMYRLVVGNEIPPSRDTGMLRRWLPDIKYVTTQYQQSVDYGKIKNLTFNSTYNYTAPDQVYRTVRSMGLNGSINMGFNLTWQLSVDSGFFYMLRLHFCQLDPWVNNTGDLIFIILIADQLASNWADVLMWTGNRKGVPVVKDYVLFIQGNLDKTNLSVKLHPRPASWIKDAVINAIEVFKISSSTGSLAGQNPNPPPQKPKVPLSSNKKSSVFTKSREAILGAVAGVLLLSSIVVFFLLKCKRNMAVESGFSKKGGTSRGGGSSSLPTNLCRYFSIAEIRAATDNFNEQLVVGVGGFGNVYKGYVDEGSVPVAIKRLKPGSQQGMQEFMNEIEMLSQLRHLHLVSLIGYCYENTEMILIYDFMERGTLRDHLYGSDNQSLSWKQRVQICIGAAGGLHYLHTGAKHVIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTSSSMTHVSTQVKGSVGYLDPEYYKRQRLSEKSDVYSFGVVLLEVLCGRPPLLRMAEKQQVSLVDWAKHRYKEGCLGEIVDPALKGQITPQCLQKFGEVALTCLLEDGSQRPSMNVIVGMLELVLQLQEDSAKNIMMMDTGGGYEEDSEDMFSSSHYSVELTDYSNSTRCNTSGNIDDSYGSKQSDRRLRICIGVARGLHYLHTGGRQGAFDVASSSFVARNHDIFAYCDPAASGIFTVKSNVFSFGVVLLVVVSAKQARDLYLERVNNPNYSVELHAEKIVDPFIKSKIGPDCWKTFIDIAERCLHKQGTERLDMVEVEIQLELALQLQQKSQTYVDCNLDDFVHTV 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01010 1012 FunFam FERONIA receptor-like kinase 37 195 - -
Vimu6g01010 1012 Gene3D - 224 410 - -
Vimu6g01010 1012 Gene3D - 36 194 - -
Vimu6g01010 1012 Gene3D Phosphorylase Kinase; domain 1 498 589 - -
Vimu6g01010 1012 Gene3D Transferase(Phosphotransferase) domain 1 889 1002 - -
Vimu6g01010 1012 Pfam Protein tyrosine and serine/threonine kinase 518 783 IPR001245 GO:0004672|GO:0006468
Vimu6g01010 1012 FunFam Receptor-like protein kinase FERONIA 590 805 - -
Vimu6g01010 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vimu6g01010 1012 SUPERFAMILY Protein kinase-like (PK-like) 848 993 IPR011009 -
Vimu6g01010 1012 ProSiteProfiles Protein kinase domain profile. 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01010 1012 SMART serkin_6 513 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01010 1012 ProSitePatterns Protein kinases ATP-binding region signature. 519 542 IPR017441 GO:0005524
Vimu6g01010 1012 Gene3D Transferase(Phosphotransferase) domain 1 590 806 - -
Vimu6g01010 1012 PANTHER OS07G0166700 PROTEIN 850 994 IPR045272 GO:0004714|GO:0006468
Vimu6g01010 1012 MobiDBLite consensus disorder prediction 413 434 - -
Vimu6g01010 1012 Pfam Malectin-like domain 40 408 IPR024788 -
Vimu6g01010 1012 SUPERFAMILY Protein kinase-like (PK-like) 490 787 IPR011009 -
Vimu6g01010 1012 CDD STKc_IRAK 528 786 - -
Vimu6g01010 1012 FunFam receptor-like protein kinase FERONIA 478 589 - -
Vimu6g01010 1012 FunFam FERONIA receptor-like kinase 224 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01010 Vimu-Chr6 10875580 10879115 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01010 851 998 Receptor kinase-like Gene Family AT3G51550 35.676 1.43e-21 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu6g01010 Malectin_like 5.4e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01010 - - vun:114186088 1144.41