Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01007 ATGGGACAATGTTTGAGCTTCTGCTGCTTTAAGCATACAGCTTCGTCTCAGCAACAGTATCCAACTGTGATAGAAGAGCTATGCCCTCAATTTTCTCTAGCCGATCTTAGGAAATGGACAAACAACTTTGACGAAAACCAAATAATTGGAATTGGAGGCCTTGGCATTGTATATAAAGGCTCTCTCCGAAACACTTGTGCTACTGAGTGTACAATTGCAATCAAGCGAATACATGCGATTACTGAGAAGGAACTTAAGCAGTTCAAGAACGAAATTGAGTTGCTCTGCCAGCTTCGCCATCCAAATTTGGTCACTCTGTTAGGATTTTGTACGTATGGTTACGAGGCTCCTGAGATTTCACAAAACAATACATTAACAGAAAAATGCGATGTTTACTCCTATGGTGTAGTTATACTAGAAGTGGTATGCAAAGACAAGCTAAAATGTGTTGAGAAGAGGCAGAAAAACCCTGTTGAGGAGAATATTGATCCAAATATTAAAGGAAAGATTGCACCAGAGAGTTGGGAAGTATTTATAAACATCACAGAAAGATGCTTGAACTTTGATCCAAATGAGCGACCATCAATGGGTGAAGTGGAGGTTCAACTTGAGCTTGCTCTGTCACTGCAGGAAGAAGCTGATGTATCTAAAATGGGACAATGTTTGAGCTTCTGCTGCTTTAATCATGCAGCTTCGTCTCAGCGACAATATCCAACTGTGATAGAAGAGCTATGCCCTCAATTTTCTCTAGCCGATCTTAGGAAATGGACAAACAACTTTGACGAAAACCAAATAGTTGGAAGTGGAGGCCTTGGCATTGTATATAAAGGCTCTCTCCGAAACAGTTGTGTTACTGAGTGTACAATTGCAATCAAGCGAATATATGGGATCACTGAGAAGGAACTTAAGCAGTTCAAGAACGAAATTGAGTTGCTCTGCCAGTTTCGCCATCCAAATTTGGTCACTCTGTTAGGATTTTGTGACCACAGAGACGAGAAGAATATTGTATATGAGTACATGACCAACGGATGTACATATGGCTACGTGGCTCCTGAGGTTTCACAAAACAATACATTAACAGAAAAATGCGATGTTTACTCCTTTGGTGTGGTTATACTAGAAGTGATATGCAAAGACAAGCTAAAAAGTGTTGAGAAGAGGCAGAAAAACCCTGTTGAGGAGAATATTGATCCAAATATTAAAGGAAAGATTGCACCAGAGAGTTGGGAAGTATTTATAGACATCACAGAAAGATGTTTGAACTTTGATCCAAATGAGCGACCATCAATGGGTGAAGTGGAGATTCAACTTGAGCTTGCTCTGTCACTGCAGGAAGAAGCAGATTTAAGAAGTACTTGTGATGATTATACCCTATCATCTATGACCATTATTAATTAG 1398 0.3977 MGQCLSFCCFKHTASSQQQYPTVIEELCPQFSLADLRKWTNNFDENQIIGIGGLGIVYKGSLRNTCATECTIAIKRIHAITEKELKQFKNEIELLCQLRHPNLVTLLGFCTYGYEAPEISQNNTLTEKCDVYSYGVVILEVVCKDKLKCVEKRQKNPVEENIDPNIKGKIAPESWEVFINITERCLNFDPNERPSMGEVEVQLELALSLQEEADVSKMGQCLSFCCFNHAASSQRQYPTVIEELCPQFSLADLRKWTNNFDENQIVGSGGLGIVYKGSLRNSCVTECTIAIKRIYGITEKELKQFKNEIELLCQFRHPNLVTLLGFCDHRDEKNIVYEYMTNGCTYGYVAPEVSQNNTLTEKCDVYSFGVVILEVICKDKLKSVEKRQKNPVEENIDPNIKGKIAPESWEVFIDITERCLNFDPNERPSMGEVEIQLELALSLQEEADLRSTCDDYTLSSMTIIN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01007 465 FunFam Receptor-like protein kinase ANXUR2 225 339 - -
Vimu6g01007 465 ProSiteProfiles Protein kinase domain profile. 43 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01007 465 Gene3D Transferase(Phosphotransferase) domain 1 343 460 - -
Vimu6g01007 465 SUPERFAMILY Protein kinase-like (PK-like) 17 207 IPR011009 -
Vimu6g01007 465 FunFam Receptor-like protein kinase ANXUR2 8 119 - -
Vimu6g01007 465 Pfam Protein tyrosine and serine/threonine kinase 46 111 IPR001245 GO:0004672|GO:0006468
Vimu6g01007 465 Pfam Protein tyrosine and serine/threonine kinase 114 202 IPR001245 GO:0004672|GO:0006468
Vimu6g01007 465 Pfam Protein tyrosine and serine/threonine kinase 263 345 IPR001245 GO:0004672|GO:0006468
Vimu6g01007 465 Pfam Protein tyrosine and serine/threonine kinase 347 434 IPR001245 GO:0004672|GO:0006468
Vimu6g01007 465 SUPERFAMILY Protein kinase-like (PK-like) 235 441 IPR011009 -
Vimu6g01007 465 Gene3D Phosphorylase Kinase; domain 1 223 339 - -
Vimu6g01007 465 Gene3D Phosphorylase Kinase; domain 1 5 112 - -
Vimu6g01007 465 PANTHER OS07G0166700 PROTEIN 245 343 IPR045272 GO:0004714|GO:0006468
Vimu6g01007 465 Gene3D Transferase(Phosphotransferase) domain 1 113 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01007 Vimu-Chr6 10862948 10868877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01007 345 445 Receptor kinase-like Gene Family AT5G59700 40.000 1.51e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu6g01007 PK_Tyr_Ser-Thr 4.5e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01007 - - gmx:100819625 366.311