Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01005 ATGGGTAACATCTGCGCTCGCTTGAAGGCGAAGCCCGCGCCGCCGCACTCTACCGCCTCGAAAAAGCGCTCCTCTTCCCGCAGAGAGAGGAAGCTCGACGACGCTGCGATTCGCGAGCAGGCCATCGCCGCCGCGATTCTCTTCAAGCAGCATCAGCAGCAGCAGCAGAACTTCGATCGGTCCACTTCGCTTAGGTACCCGAATGCGGTCTCCAAGAAGAGCAGCGGCAGCAGCAACACCTTGCCGAGGAGTTCGAGTTCGAGGGCCAGGTCCCTCACCGACCCTCTCCTTCAACCTCATCAACTTCTCAATCAGATGAAGATGTGGAAAGTGGAATGGAATGATGAAGAAAGCTATAGGATTTTGGAAAGGATCGTCTGTAATGGGCGTATGAAGGAAGTGAAGTTTATCCTTTTGAAGTGCTTTTTACTGGACGTTTGGTGTAGCTTTGAAGGGAACATTATGTTGCCTCTTTCTTGTCACAACATAGATGTCAAGGATGTGAAAGTTGATGATCTTGAAACAAATCATATTGTCCTTGTTCATGGAGGTGGCTTTGGGGCCTGGTGTTGGTATAAATCCATTGCACTTCTAGAAGAAAGTGGTTATAAAGTAGCTGCAATAGATTTAACTGGTTCTGGAGTGAGTTCATTTGATACAAACAGCATTACAAGTTTGTCACAATATGTGAAGCCACTCACTGACTTCCTTGAAAAACTTCCAGAAGGCGAAAAGGTGATTTTGGTTGGGCATGATTTTGGAGGGGCATGTATATCATATGCAATGGAGATGTTTCCTCTTAAGATTTCCAAAGCTGTGTTTATTGCTGCAGCAATGCTGACGAATGGACAAAGCACTCTCGATATTATTTCTCAGCAGGCAGGTTCAGATGATCTTATGCAACAGTCTCAGATTTTTATATATGCTAACGGGAATGACCTTCCTCCCACTTCTTTTGATCTGAACAAGTCATTGTTGAAGGATTTGTTATTCAACCAAAGTCCCTCCAAAGATGTTGCATTGGCATCTGTCTCCATGAGGTCTGTACCATTTGCACCAGTTTTAGAGAAGCTTTCCCTTTCAGACCTGAAATATGGATCTGTAAGGCGGTTTTATATACAAACTCTTGAAGACAATGCCATACCCATTTCACTTCAGGAGAACATGATAAATGCAAATCCCCCAGAAAAGGTTTTCCGTTTGAAGGGGGCTGATCATTCTCCTTTTTTCTCAAAGCCTCAAGCTCTGCATAAGTTGTTGACAATTAGAAAAGAAAAGAAAACCTGTAACTTGTCACTGATCCTATGCAACGCTGCGATCATCGTAACAAGATATCATGACAATGCAGAGGCACATTACATGGAAGGAGTTCTTGGCATCAAACTTGTTTACATTCCTTTTGATGTTCCATTAGTAATGCTGGTTGATGGAGATTTACATTCTGAGAATCCCGGAAGAGCTGCTGCTTTTCTCTAG 1476 0.4411 MGNICARLKAKPAPPHSTASKKRSSSRRERKLDDAAIREQAIAAAILFKQHQQQQQNFDRSTSLRYPNAVSKKSSGSSNTLPRSSSSRARSLTDPLLQPHQLLNQMKMWKVEWNDEESYRILERIVCNGRMKEVKFILLKCFLLDVWCSFEGNIMLPLSCHNIDVKDVKVDDLETNHIVLVHGGGFGAWCWYKSIALLEESGYKVAAIDLTGSGVSSFDTNSITSLSQYVKPLTDFLEKLPEGEKVILVGHDFGGACISYAMEMFPLKISKAVFIAAAMLTNGQSTLDIISQQAGSDDLMQQSQIFIYANGNDLPPTSFDLNKSLLKDLLFNQSPSKDVALASVSMRSVPFAPVLEKLSLSDLKYGSVRRFYIQTLEDNAIPISLQENMINANPPEKVFRLKGADHSPFFSKPQALHKLLTIRKEKKTCNLSLILCNAAIIVTRYHDNAEAHYMEGVLGIKLVYIPFDVPLVMLVDGDLHSENPGRAAAFL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01005 491 SUPERFAMILY alpha/beta-Hydrolases 176 420 IPR029058 -
Vimu6g01005 491 PANTHER METHYLESTERASE FAMILY MEMBER 175 421 IPR045889 -
Vimu6g01005 491 MobiDBLite consensus disorder prediction 1 32 - -
Vimu6g01005 491 MobiDBLite consensus disorder prediction 58 91 - -
Vimu6g01005 491 FunFam putative methylesterase 11, chloroplastic 172 425 - -
Vimu6g01005 491 Gene3D alpha/beta hydrolase 170 423 IPR029058 -
Vimu6g01005 491 Pfam alpha/beta hydrolase fold 176 413 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01005 Vimu-Chr6 10855785 10860678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01005 161 249 Miscellaneous Gene Families AT3G29770 68.539 2.94e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01005 - - gmx:100818550 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01005 6 10855785 10860678 Vimu6g01005 6 10855785 10860678 ECH