Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01000 ATGTCTGGAAAGTCTTTGAAATCCTTGAAGGATGAAAACCCAGATTTGCAGAAGCAAATTGGGTGCATCACTGGATTTTTTCAGCTCTTTGACCGCCACCGTTTCCTCACAGGCCAACGCTCCGGCACCTGCATTCAGCACAGCCCAACTTCAGGTGCAAGCAGTTATGAAATTAATGAACTCAACGGTACAACGCTGAAACCTAAGGCAAAGAATCTCAAGGATGCTAGAGAAAAGCAACAATTCTCCACAGAATCATCTATAACTTCTTTATCTTCATCCTCTTGTTCATCTAGCATGTCATCCCTTGAGTTTAACAGAACCATTCAAATGATATCGTCATCAAGAAATCAGACAAGAATTCCTAAAAATACAAATTCAAAAGTAGCAAAGAAACAACTTGATACCTCGCACCATCAATCCCTCCATTTCAATCATATTGTCAAAGACTCGATGCATAAAGAAGCTCAAGGATTGTCTGTGAGAACTGTGGCTGAAGAGGAAAAGAAGGGTCACACTAATACCTTGAAACTCATAGACTCTCCCCGGCCTCTGCGGTCACAGAAATCTGTCAATGCAGGAGTTACAGTTGCCGGCGAACCATTCCATACTCTTGCCAAGTCCAAGAAAACACCTTGGGACTCACCACGGCTCTCTTATGATGAAACATTCAAATCTTCCACAAAGCATAAGGAATTCCCAAGGCTTTCCTTGGACAGCAGAGAAGGGTCTAATGAAGGAAACAAGTCTCGCAACCTGTTGAAGGGTCAGCAGAAAGGTTATGCAAAGAGCTCTAGCACAATGATTAACCAACTGCAAGAACCAGAAACTTCCAAAAGATCTTCCAGTGTTGTAGCAAAGTTGATGGGACTTGAAGCCCTACCGGAGCGTACACAAACTTGTGGGAGTCCGATTGGAACTTCTAGTTGCTCTAGCACAAGTGATGAAGATAAGCACCACCAAAAATTCGCCTTGCCTCGGTTTAAAAAGGCTGATTCAATCACAAATGAGAAGCCTTATTCACGATTTGCACTAGAATCAACTCCTTGGAGGCAACCTGATTCGATCCAATGTTCTCAATTACAAACTTCCAAGGATTGTGAATCTGATGTAAAAGCCTCAAAGACCTCTCTCACGGTATATGGGGAAATTGAGAAAAGGGTGGCAGAACTTGAGTTCAAAAAGTCTGGAAAGGATCTCAGAGCCCTTAAACACATTCTTGAAGCAATGCAGAGACGTAAAGATTCGTTAGACATTGCTAGAGATCAGGCTTCAAATTCTCCATCTGACAATAGGAATAGTACTAATTCCAATGAAAGCTCGAACATACAAAGCCCACGAGTACGACAGAAAGACCTGGCATCTGTCACGGTTGAGATGTCAAATTCTAACCGGGGTAGTAAATTGCCAATTGTCATCATGAAACCTGCGAAAGTTACTAGAAAAGTCAATAGTCCTTCTCCTACAGAATTATCAGTTCATGGAAAATCTGGTGTCAGCAAATGTTCCCCTAGTAATCCAAGAAATGGAAGATTAGCTGACAAAAATAGTGCTAAAGGCATAAGTTCAACAAAAAATAACAAGGGTCCTTTTGGCCAACAGGTTCGTCCATCATATAAAAACTTGAGAACTTCAAAATTGATGCAATCCTTGGAAGTTTCTCAAGAGAACACTGAAGAATGCACCACCAATTCTGGTTATATAACTGTGACTGGGAGCCCCAGATTACAAAAGAAGTTTGGTCTGGAGAGGTGTTCACGACCAACCAGTTCATCGTCGGATTCCTGCATTAACAGAAGAGAGCACAATAGACAACCTGTGGAATTGTCTTCTCCAAGTACAACACCAACACATAAGTTCTCCAGTTTGCAGCAAATAAATGAACGTTTCAGTGAGATCAGTAGTAACTGGAGGAATTTTAAGCACCATGTTAATGTCATTTCGGACTTAGACGACAAAAGAAACTCGATCGGTCATAGTGAGATTGAAGTCATTCGAATTGATCAAACTGGAAAGATCATTAGTTCCTCCATCCAGCTGAGTTCTATGCATCAATATAATGCATTTGAAGAGTTAATGAAGGCTGAGACAATGGTTACTGCGGAACAACCAAGTCCTGTGTCTGTTCTTGATGCTGCATTCTATAGAGACGATCCACCATCTCCAGTGAAAAAGAAACCAGACATCTCAAAAAATTTAGGTGAAGCTCAAAGCACTGATGGTGACAGTGAAGAGAACTCAATGGATATACTTCAAGAAATTGACTCGATTGAAGAGAAATTAATCAATTTCAATAACTCTAAGCACCCTGATCATAAGTATATAACAGAAATACTGTTAGCATCAGGTCTGCTCAGTGGCCACAGCTCCAGCCAGATATTTCACTCGCCGGGTCACTTGATTAATCCAAAATTGTTCTTTGCACTTGAAAAAGTGAAGACAGAGAAGAGACATTATAACATTGAAGCCAATGCCAAAAAGATTGCCAGGTTAAAAAATCCTGAGCAGATGCAAAGAAAACTCATATTTGATGTTGTCAATGACATTTTAGTTCAAAAGCTGATATTGGATAGTTCTTCTGCATTGTGGTGCCAACCAAGTGAGTTTGCAGGCACAAGACCAAAAGGGCAGCAGCTTTTGGATGAGCTGTGCACAGAAATAGATCAGTTGCAGCCTCAAAATGGGAATGTAAGTTTAGCTAATGAGGATGAAAATTTGAAGCATCACCACGCAATTTGGACTAACTGCTGCACTGAGATACCAAATGTTGTGTTGGATATTGAACGTTTGATCTTTAAGGATTTGATAACCGAGGTTGTGAGAGGTGAAGTAGCAAACCACACTGGTACACATTGCAGGCAACTAGTGTTTTTCAAGTAG 2880 0.4094 MSGKSLKSLKDENPDLQKQIGCITGFFQLFDRHRFLTGQRSGTCIQHSPTSGASSYEINELNGTTLKPKAKNLKDAREKQQFSTESSITSLSSSSCSSSMSSLEFNRTIQMISSSRNQTRIPKNTNSKVAKKQLDTSHHQSLHFNHIVKDSMHKEAQGLSVRTVAEEEKKGHTNTLKLIDSPRPLRSQKSVNAGVTVAGEPFHTLAKSKKTPWDSPRLSYDETFKSSTKHKEFPRLSLDSREGSNEGNKSRNLLKGQQKGYAKSSSTMINQLQEPETSKRSSSVVAKLMGLEALPERTQTCGSPIGTSSCSSTSDEDKHHQKFALPRFKKADSITNEKPYSRFALESTPWRQPDSIQCSQLQTSKDCESDVKASKTSLTVYGEIEKRVAELEFKKSGKDLRALKHILEAMQRRKDSLDIARDQASNSPSDNRNSTNSNESSNIQSPRVRQKDLASVTVEMSNSNRGSKLPIVIMKPAKVTRKVNSPSPTELSVHGKSGVSKCSPSNPRNGRLADKNSAKGISSTKNNKGPFGQQVRPSYKNLRTSKLMQSLEVSQENTEECTTNSGYITVTGSPRLQKKFGLERCSRPTSSSSDSCINRREHNRQPVELSSPSTTPTHKFSSLQQINERFSEISSNWRNFKHHVNVISDLDDKRNSIGHSEIEVIRIDQTGKIISSSIQLSSMHQYNAFEELMKAETMVTAEQPSPVSVLDAAFYRDDPPSPVKKKPDISKNLGEAQSTDGDSEENSMDILQEIDSIEEKLINFNNSKHPDHKYITEILLASGLLSGHSSSQIFHSPGHLINPKLFFALEKVKTEKRHYNIEANAKKIARLKNPEQMQRKLIFDVVNDILVQKLILDSSSALWCQPSEFAGTRPKGQQLLDELCTEIDQLQPQNGNVSLANEDENLKHHHAIWTNCCTEIPNVVLDIERLIFKDLITEVVRGEVANHTGTHCRQLVFFK 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01000 959 MobiDBLite consensus disorder prediction 582 619 - -
Vimu6g01000 959 MobiDBLite consensus disorder prediction 166 187 - -
Vimu6g01000 959 MobiDBLite consensus disorder prediction 480 538 - -
Vimu6g01000 959 Coils Coil 407 427 - -
Vimu6g01000 959 MobiDBLite consensus disorder prediction 207 283 - -
Vimu6g01000 959 Pfam Domain of unknown function (DUF4378) 771 938 IPR025486 -
Vimu6g01000 959 PANTHER LONGIFOLIA PROTEIN 1 955 IPR033334 GO:0051513
Vimu6g01000 959 MobiDBLite consensus disorder prediction 223 248 - -
Vimu6g01000 959 MobiDBLite consensus disorder prediction 249 283 - -
Vimu6g01000 959 MobiDBLite consensus disorder prediction 419 461 - -
Vimu6g01000 959 MobiDBLite consensus disorder prediction 719 745 - -
Vimu6g01000 959 MobiDBLite consensus disorder prediction 298 317 - -
Vimu6g01000 959 MobiDBLite consensus disorder prediction 421 461 - -
Vimu6g01000 959 MobiDBLite consensus disorder prediction 482 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01000 Vimu-Chr6 10823265 10828288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01000 139 958 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 31.042 6.31e-86 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01000 - - vun:114182931 1641.71