Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00996 ATGGTACCATGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTAGCTACCAACAATGAGATACATAAGATCATGATTAAGAGCCCAAAAGAAGTGGATTTTGCTTTAAAACAGGAGGGTGGTCATTCTCAATCAATTAGTGATCCTGAAAAGGCAAAGGCTTCATCAAGCCCAGCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCTAGAGCCTTTGGAGGGAAAGACAGGCACAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGACGGGTACGATTATCAGTACCAACTGCTATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCAAGCAAGGTTGTTGATTGGTTGCTGAATGCTGCTAAGCATGAAATTGATGAACTTCCACCACTGCCAATTATTCCTTCAGTGAATAACTTCACCCTTGGTTATCCA 477 0.4256 MVPWNRILTSIKWKDKTLHLATNNEIHKIMIKSPKEVDFALKQEGGHSQSISDPEKAKASSSPAAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSVNNFTLGYP 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00996 159 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 43 144 IPR005333 GO:0003700
Vimu6g00996 159 MobiDBLite consensus disorder prediction 44 67 - -
Vimu6g00996 159 ProSiteProfiles TCP domain profile. 84 142 IPR017887 -
Vimu6g00996 159 MobiDBLite consensus disorder prediction 45 59 - -
Vimu6g00996 159 Pfam TCP family transcription factor 84 144 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00996 Vimu-Chr6 10808644 10809946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00996 67 156 TCP Transcription Factor Family AT3G02150 82.222 5.24e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu6g00996 TCP 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00996 - - var:108327895 298.901