Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00990 ATGGCTTCAAATAATATCCTAAAAGCGAGTGAGATATTTGAAGGTCAAGTTCACTTGTACAAACACTTGTATGCTCATGCAGTAGATTGTATGAGTATTAAATGGATGGTTGAGCTTGGCATACCAGACATCATCCACAACCATTGTCAACCCATTTCACTTCCAAAGTTGGTGTCCATTCTACAAATTCCACCAAGTAAAGTTAGAGGAGTGAAGAGTCTCCTACGCTACCTGGCACACAATGGATTCCTTCAGATTGTAAGAGTCCATCACAGCACAGAAGAAAACGAAGCATTTTCTCTAACACCTGCATCACACCTTCTTGTCAAAGGCACTGACTTTTGTCTTGCACCAATGGTTGAGTATATAACTAATCCAACTTTATCACATACGTGGTCTCACTTGAAGAAGTGGACTTATGAGGATGATCTTACACTGTTTGATGTCTCCCTTGGATCAAATATGTGGGACCTTCTTAGTAAAAAGCCAGAGTTTAACGACTCGTTCAATGAGGCAATGGCTAGTGATTCTCAGATGATGAACCTGGCATTAAGAGGTTGCAATTGGGTGTTCGAAGGAGTGGAGTCCATTGTGGATGTCGGAGGTGGAACCGGAAACACAGCCAAGGCTATCTGTGATGCATTTCCTAACGTTAAATGCACTGTGTTTGACCGTCCACAGGTTGTGGAGAAGTTGTCGGGAACCAAGAATTTGACATATGTTGGCGGTGACATGTTCGAATCTATTCCCAGGGCTGATGCAGTTCTACTTAAGTGGATTTTACATGATTGGAATGACGAAGATTGTAAGAGGATATTAGAAAATTGCAAAAAAGCTATTTCTGGTAAAGGAGAAAGTGGAAAAGTAATTGTGATAGAAAATGTGATAAACGAAGGCCAAGATGAGCAGGGACTTACTGGACTAAAGCTCGCCTTGGATGTGAAAATGACAAGTCTTCTTAATGGAAAAGAAAGAAGAGAAGAAGAATGGAAGAAACTGATCGTGGAAGCAGGGTTTCAAAACTACAAAATATCTCCTTTCACAGGATGTTTGTCTCTTATTCAGATCTATCCTTGA 1077 0.4067 MASNNILKASEIFEGQVHLYKHLYAHAVDCMSIKWMVELGIPDIIHNHCQPISLPKLVSILQIPPSKVRGVKSLLRYLAHNGFLQIVRVHHSTEENEAFSLTPASHLLVKGTDFCLAPMVEYITNPTLSHTWSHLKKWTYEDDLTLFDVSLGSNMWDLLSKKPEFNDSFNEAMASDSQMMNLALRGCNWVFEGVESIVDVGGGTGNTAKAICDAFPNVKCTVFDRPQVVEKLSGTKNLTYVGGDMFESIPRADAVLLKWILHDWNDEDCKRILENCKKAISGKGESGKVIVIENVINEGQDEQGLTGLKLALDVKMTSLLNGKERREEEWKKLIVEAGFQNYKISPFTGCLSLIQIYP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00990 358 FunFam O-methyltransferase ZRP4 110 358 - -
Vimu6g00990 358 Pfam O-methyltransferase domain 132 340 IPR001077 GO:0008171
Vimu6g00990 358 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Vimu6g00990 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vimu6g00990 358 PANTHER O-METHYLTRANSFERASE 19 343 IPR016461 GO:0008168
Vimu6g00990 358 CDD AdoMet_MTases 197 293 - -
Vimu6g00990 358 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Vimu6g00990 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 358 IPR016461 GO:0008168
Vimu6g00990 358 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
Vimu6g00990 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 354 IPR029063 -
Vimu6g00990 358 Gene3D - 2 108 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00990 Vimu-Chr6 10674459 10675702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00990 22 344 Monolignol Biosynthesis Gene Families AT5G54160 31.498 6.39e-44 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00990 K22588 K13262 gmx:100811609 504.982