Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00980 ATGGCTGTAGAGGAGTCTGAGTCTGTGATTGGAGAGCTAGAAAGAGAGGAGAACTTGATTGCTGCAGTAAGGCATATTGTGAAGGCACTGGGGCCGAATAAGACCCTTACCAGTGATGCCAAGAAAATTCTGGCAGATCTTGGGACCAGATTGTCTTCCATGTCCGTACCTAGTGAGAAGGAGGAGGGTAAACAAGGCCAAGGAGGACAGGGCGGCGATGATCATGATGGTGGTGCTGATGATGATGAGGAGGAGGAGGAGGAGGATGATGAGGGTCTTAATGCTATTGAAGAAAGACTTAATGTGATTCAGGAGAAAATTATGAGATGGGAGGAGGATCAGTCCATGATTTGGGATTTGGGAACTGAAGAAGCATCTGAGTATCTGAATGCTGCTAACGAGGCCCGCAGGTTGATTGAGAAGTTGGAAAGTTTGCATTTGAGGAAAGAGGATCAAGAGTACGAGTTTCTGCAGAAGGCTTATAGTGTTCTTCAAACTGCTATGGCACGCCTTGAAGAAGAATTCAGTAACTTGCTTATCCAGAACAGGCAACCTTTTGAGCCTGAATATGTCTCTTTTCGTTCCAGTGAGGAAGATGTTGTTGATGAGAACTCCATAATCTCTATAGGTGATGAATCAGTTGAGGAATCACTTCAAAGAGATAGTGTGAGCAGAGCGTCTGAGGAGCATATCATTGATTTGGTTCATCCAGCCGTGATCCCGGATCTCAGGTGTATTGCAAACTTACTTTTTGCTTCAAATTATTGCCAGGAATGTTCCAATGCTTATATCATTGTCCGGAGGGATGCCCTAGATGAGTGCCTCTTCATTCTTGAAATGGAAAGGCTCAGCATCGAGGACGTCCTGAAAATGGAATGGGGTACTCTGAATTCCAAAATCAAAAGATGGATTTGGGCTGTCAAAATCTTTGTTAGGGTGTATCTTGCAAGTGAGAGGTGGCTCAGTGACCAGATTTTTGGGGAGGGTGAGCCTGTCAGTCTATCTTGTTTTGTTGATGCATCTAAGGCTTCGATATTGCAACTTCTGAATTTCGGTGAAGCCATGTCCATTGGCCCTCACCAACCTGAGAAACTGTTCCGTGTTCTTGACATGTACGAGGTTTTGCAAGACCTTATGCCAGACATTGATGCTTTGTACACAGATGAGGTTGGTTCCTCGGTTAAAATTGAATGTCATGAAGTTCTGAAGAGACTAGGCGATTGTGTGAGGGCAACATTTTTTGAATTTGAAAATGCCATTGCAACAAATGCATCATCAACCCCTTTTGTTGGTGGTGGCATACATCCTTTAACCAAATATGTTATGAATTATCTCAGAACCCTTACGGACTACAGTGACATACTCAATCTACTTCTTAAGGACCAGGAAGAGGAAGAATCCATTTCGCTGTCACCTGACATGAGCCCTGGTACAGAAGAAGATAGCAAAAGCCAGGGGTCTCCACGTAGAGTTTCCTCAATGGCCCTTCACTTCCGATCACTCGCATCTATCTTGGAAAGCAACCTTGAGGAGAAGTCTAAGTTATACAAAGAAGTCTCCTTGCAGCACTTGTTCTTGATGAACAACCTGCATTATATGGCTGAAAAGGTCAAGGGGTCTGAACTCAGGCTGGTGTTTGGAGATGAATGGATTCGAAAGCGCAATTGGAAGTTTCAGCAGCATGCAATGAAATATGAGAGGGCTAGTTGGAGTTCCATTCTTCTCTTACTAAAGGATGAAGGGATTCTTGTTCCGGGTACAAATTCGGTCTCAAAAAGTCTTCTTAAAGAGAGACTACGAAGCTTCTACCTTGGTTTTGAGGATGTTTACAGGATCCAGACAGCTTGGCTTATCCCAGATATTCAGCTTCGTGAAGATTTACGGATTTCTATATCTCTCAAAGTAATCCAAGCTTATAGAACTTTTGTTGGAAGGCATAACAGTCACATAAGTGACAAAATCATTAAGTACAGTGCTGATGATTTAGAAAACTACCTTTTGGATTTCTTTGAAGGATCTCAAAAGTGGTTGCAAAATCCTCATAGAAGGTAG 2052 0.4313 MAVEESESVIGELEREENLIAAVRHIVKALGPNKTLTSDAKKILADLGTRLSSMSVPSEKEEGKQGQGGQGGDDHDGGADDDEEEEEEDDEGLNAIEERLNVIQEKIMRWEEDQSMIWDLGTEEASEYLNAANEARRLIEKLESLHLRKEDQEYEFLQKAYSVLQTAMARLEEEFSNLLIQNRQPFEPEYVSFRSSEEDVVDENSIISIGDESVEESLQRDSVSRASEEHIIDLVHPAVIPDLRCIANLLFASNYCQECSNAYIIVRRDALDECLFILEMERLSIEDVLKMEWGTLNSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGEPVSLSCFVDASKASILQLLNFGEAMSIGPHQPEKLFRVLDMYEVLQDLMPDIDALYTDEVGSSVKIECHEVLKRLGDCVRATFFEFENAIATNASSTPFVGGGIHPLTKYVMNYLRTLTDYSDILNLLLKDQEEEESISLSPDMSPGTEEDSKSQGSPRRVSSMALHFRSLASILESNLEEKSKLYKEVSLQHLFLMNNLHYMAEKVKGSELRLVFGDEWIRKRNWKFQQHAMKYERASWSSILLLLKDEGILVPGTNSVSKSLLKERLRSFYLGFEDVYRIQTAWLIPDIQLREDLRISISLKVIQAYRTFVGRHNSHISDKIIKYSADDLENYLLDFFEGSQKWLQNPHRR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00980 683 PANTHER EXOCYST COMPLEX PROTEIN EXO70 90 672 IPR004140 GO:0000145|GO:0006887
Vimu6g00980 683 Coils Coil 93 113 - -
Vimu6g00980 683 MobiDBLite consensus disorder prediction 50 95 - -
Vimu6g00980 683 MobiDBLite consensus disorder prediction 76 94 - -
Vimu6g00980 683 MobiDBLite consensus disorder prediction 469 489 - -
Vimu6g00980 683 Coils Coil 125 181 - -
Vimu6g00980 683 Pfam Exo70 exocyst complex subunit 301 667 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vimu6g00980 683 SUPERFAMILY Cullin repeat-like 114 671 IPR016159 -
Vimu6g00980 683 Gene3D Exocyst complex component Exo70 107 678 - -
Vimu6g00980 683 MobiDBLite consensus disorder prediction 467 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00980 Vimu-Chr6 10593867 10605488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00980 12 683 EXO70 exocyst subunit family AT3G29400 48.321 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00980 K07195 - gmx:100799102 1203.73