Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00979 ATGGTTAAGTGGGGAATACGCTGTTTTCCGAGTGGATTGAACAAGGCACGCCGCAGACTTGATGGTGTGGAGTGTGGAGTTCAACCACATCTCCACAACCTTTGGTGGTCAATTTTAATTTTTGAGCTGTGGCTAGTGAGAAAATACATTGCAATTGCATTGATGATTATTTTTAATATGAAAGAATATGATCTGGGAATTGGAAATCTACTAAAGAATTCTGGTGTCAAGCACATGAATCAAGATTTTTCTATGTCTAGCCCCTCACTTTTCCAAGCAATTAGATCAATGTCATCTGCAAAGCTTTTTGTCGGAGGTATTTCTTACAGCACTGATGATATGAGCCTGCGGGAGGCATTTGCTCGCTATGGAGAAGTTCTTGATGCCAAGGTTATTATGGATCGTGAAACTGGTAGGTCAAGAGGTTTTGCCTTCATAACCTTTGCAACAAGTGAAGATGCATCTTCTGCCATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGGAGAATTCGGGTGAATTATGCTACAGAAAGGGCACGCCCAGGGTTTGGTGGTGGTGGAGGTGGCTATGGTAGCGGTGGTGGGTATGGTGGTGGTGGTTATGGTGGCTATGGTGGAGGTGGATATGGCGACAGCAGGAGTGGTGGAAGCTATGGTGGTGATAGTTATGGAGGAAACAACAACAGGGGTGGAAGCTATGGAGGTGGTGGTTATGGTGTTACAGGAAGCTATGGCGGTGGCAATGCTGAAACTAGTTACACTAGTGGTGCTGATGCTAGTAATTACCAATTTGGTGGAAATTCTGGTGGAGATCATGGCTCAGCTAGTGGTGAATTCGGAAGCAGCCAAAATGAAGGAACAGGTGCAGCAGACAATTATGAATTCAATGAGCCACTTGAAGACAATGTGAGGGGGAACAGTGATGAACCTGATGACTATGCTCAGACCCGCAGTTCATTGCTTGGTTTGAACATGATAGTTTGTCAGCTCAAGGACTGA 1002 0.4521 MVKWGIRCFPSGLNKARRRLDGVECGVQPHLHNLWWSILIFELWLVRKYIAIALMIIFNMKEYDLGIGNLLKNSGVKHMNQDFSMSSPSLFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVLDAKVIMDRETGRSRGFAFITFATSEDASSAIQALDGQDLHGRRIRVNYATERARPGFGGGGGGYGSGGGYGGGGYGGYGGGGYGDSRSGGSYGGDSYGGNNNRGGSYGGGGYGVTGSYGGGNAETSYTSGADASNYQFGGNSGGDHGSASGEFGSSQNEGTGAADNYEFNEPLEDNVRGNSDEPDDYAQTRSSLLGLNMIVCQLKD 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00979 333 Gene3D - 73 198 IPR012677 -
Vimu6g00979 333 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 95 271 - -
Vimu6g00979 333 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 72 198 - -
Vimu6g00979 333 MobiDBLite consensus disorder prediction 265 315 - -
Vimu6g00979 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 172 IPR000504 GO:0003723
Vimu6g00979 333 PRINTS Eggshell protein signature 183 198 - -
Vimu6g00979 333 PRINTS Eggshell protein signature 96 112 - -
Vimu6g00979 333 PRINTS Eggshell protein signature 236 254 - -
Vimu6g00979 333 PRINTS Eggshell protein signature 210 220 - -
Vimu6g00979 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Vimu6g00979 333 CDD RRM2_NsCP33_like 101 176 - -
Vimu6g00979 333 SMART rrm1_1 101 174 IPR000504 GO:0003723
Vimu6g00979 333 MobiDBLite consensus disorder prediction 298 312 - -
Vimu6g00979 333 MobiDBLite consensus disorder prediction 265 291 - -
Vimu6g00979 333 SUPERFAMILY RNA-binding domain, RBD 84 209 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00979 Vimu-Chr6 10582502 10584561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00979 85 186 C2H2 Transcription Factor Family AT2G19380 32.353 5.92e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00979 K12741 - gmx:100818300 301.212