Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00960 ATGCTAAGTCCTCCGTCCCTAACATGTGTCACCGTCTTACCCTTGGCCAAGAGGAAATATATTGCTGATAAGATCCTTGGCCTGTTAATAGGAGGCCACGACACTGCAAGTTCTGTATGCACTTTTGTCGTCAAATACCTTGCTGAGCTCCCTCCCAATATTTATGAAAATGTCTATCAGGAACAAATGGAGATTGCAAAATCGAAAGCTCCGGGAGAATTGTTGAATTGGAATGACATCCAGAAGATGAAATATTCGTGGAATGTTGCTTGTGAAGTAATGAGACTTGCGCCTCCACTCCAGGGTGCTTTCAGGGAAGCCATGGATGACTTTGTGTTAAATGGATTCTCAATTCCAAAAGGCTGGAAGTTGTATTGGAGTACAAGTTCAACACACAGGAATCCAGAGTGCTTCGCAGAGCCAGAGAAGTTTGATCCGAGTAGATTTGAAGGAACAGGACCAGCTCCTTATACTTATGTGCCATTTGGAGGAGGGCCAAGGATGTTTCTTGGAAAAGAGTATGCTCGAATGGAAATATTGGTGTTCATGCACAACTTGGTCAAAAGGTTCAAATGGGAAGCCATTATTCCTGATGAGAATATTTTTTATGATCCCATGCCTGTTCCTGCCAAAGGCCTCCCTATTCGTCTTTATCCTCACCAACCTTGA 669 0.435 MLSPPSLTCVTVLPLAKRKYIADKILGLLIGGHDTASSVCTFVVKYLAELPPNIYENVYQEQMEIAKSKAPGELLNWNDIQKMKYSWNVACEVMRLAPPLQGAFREAMDDFVLNGFSIPKGWKLYWSTSSTHRNPECFAEPEKFDPSRFEGTGPAPYTYVPFGGGPRMFLGKEYARMEILVFMHNLVKRFKWEAIIPDENIFYDPMPVPAKGLPIRLYPHQP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00960 222 PRINTS P450 superfamily signature 160 169 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 PRINTS P450 superfamily signature 169 180 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 PRINTS P450 superfamily signature 31 48 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 PRINTS P450 superfamily signature 88 99 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 PANTHER CYTOCHROME P450 26 19 209 - -
Vimu6g00960 222 SUPERFAMILY Cytochrome P450 19 219 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 Gene3D Cytochrome P450 14 219 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 Pfam Cytochrome P450 21 194 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 PRINTS E-class P450 group I signature 127 151 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 PRINTS E-class P450 group I signature 169 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 PRINTS E-class P450 group I signature 159 169 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g00960 222 PRINTS E-class P450 group I signature 20 37 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00960 Vimu-Chr6 10462215 10463326 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00960 21 202 Cytochrome P450 AT5G45340 41.758 6.35e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00960 K20667 - cave:132184488 365.155