Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00958 ATGGTGATGGCTTTGTCTAACTGTTTGGTTCTTTTGGTTCTTTTAATGGCTCTCTCTGTACCAGCTTTCTCATATGACAGTGCATGGCGTAGTGCCCATGCAACTTTCTACGGTGACATGCAAGGTGGAGAAACCATGCAGGGAGCTTGTGGTTATGGTGATCTGTTCCAGCAAGGTTACGGGCTTGAAACCGCAGCCATAAGCACAGCACTGTTCAACAATGGCCTGAGTTGTGGTGCATGCTTTGAGATAAAGTGCGTGGACGACCCTCAATGGTGCATTCCGAATGCAGGGTCAATCAAAGTTACTGCAACAAATTTCTGTCCCCCGAATTACTCGCCACCGAATTTAGATCACTGGTGCAATCCTCCACAGGAACACTTCGACTTGTCGATGAAAATGTTCACCAGCATTGCTGCATACAGAGCTGGAATCATCCCAGTGATGTATCGTAGAGTGGCATGCAGGAAAAGTGGGGGTGTGAAGTTCCAAACAGCAGGGAACCCTTATTGGCTTTTGGTTTTGGTGTACAACGTTGGCAATGCCGGTGATGTTTCTGAGGTTAGCATCAAAGGATCTAATGGTGAGTGGAAATCCATGTCTAGGGTTTGGGGACAGAATTGGTTGACCGGAGAGAACTTGGTGGGACGACCCTTGTCCTTTAAGGTGACTACCAGTGATGGAAAAGCGGTGGAGTTCGACGAGGTTGCACCTTCCGGTTGGCAATTTGGACAGAGCTACGAGGCCAACACTAATTTTTAG 762 0.479 MVMALSNCLVLLVLLMALSVPAFSYDSAWRSAHATFYGDMQGGETMQGACGYGDLFQQGYGLETAAISTALFNNGLSCGACFEIKCVDDPQWCIPNAGSIKVTATNFCPPNYSPPNLDHWCNPPQEHFDLSMKMFTSIAAYRAGIIPVMYRRVACRKSGGVKFQTAGNPYWLLVLVYNVGNAGDVSEVSIKGSNGEWKSMSRVWGQNWLTGENLVGRPLSFKVTTSDGKAVEFDEVAPSGWQFGQSYEANTNF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00958 253 CDD DPBB_EXPA_N 29 155 - -
Vimu6g00958 253 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Vimu6g00958 253 Gene3D - 160 253 IPR036749 -
Vimu6g00958 253 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Vimu6g00958 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Vimu6g00958 253 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Vimu6g00958 253 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vimu6g00958 253 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vimu6g00958 253 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Vimu6g00958 253 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Vimu6g00958 253 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Vimu6g00958 253 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Vimu6g00958 253 Gene3D - 16 156 IPR036908 -
Vimu6g00958 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Vimu6g00958 253 SUPERFAMILY Barwin-like endoglucanases 13 178 IPR036908 -
Vimu6g00958 253 Pfam Lytic transglycolase 64 150 IPR009009 -
Vimu6g00958 253 SUPERFAMILY PHL pollen allergen 157 248 IPR036749 -
Vimu6g00958 253 SMART dpbb_1 64 150 IPR007112 -
Vimu6g00958 253 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vimu6g00958 253 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Vimu6g00958 253 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Vimu6g00958 253 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vimu6g00958 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Vimu6g00958 253 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vimu6g00958 253 PANTHER EXPANSIN-A15 9 250 IPR002963 GO:0009664
Vimu6g00958 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 160 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00958 Vimu-Chr6 10447176 10449086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00958 21 253 Expansin Gene Family AT5G39300 60.515 6.51e-110 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00958 - - gsj:114422475 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00958 6 10447176 10449086 Vimu6g00958 6 10447176 10449086 ECH