Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00955 ATGGAGTACGGCAATTGGGCTGAATCGTTGCAAACCGAAACCCCACTTCTCTCTTTCCCCCAACCTTCCTCATCATCTTATGCTCATCCACCATCTCAGAATACCCATTATCCCTCTTATCCTCAAAACCCTAACCCCTCTTCCTCTCTTCCCCTCAAACCTCCTGGGGTTGATCCCCTTCCCCCGTCTAACCCTATTATGTATTCGAATCATGAATCTGTTCCCATTCCCAGTTTGATCTATACCCAGACCCATGTTGGGGCTGGTTCCGATTCTGGGTACTATGTAAACCAGAACTGGGCTGCCAGAGAGGCTGTTAGGCAATTTGGTTCTGACCCAACTGTCTATGCGCCTGGTATCTCTGTACCATCCAATGGCTCAGAACAATCGGCTATATGGTGGGCAAATACTGCAGCTCAACAACATGTCAATGGAATACTGAATAAAAAGCAAAAAAAAGCTAAAACTAAGGTTGTGCAACCTGCATATTGTGAAGTTTGCAAGATAGAATGCACTGGCAAGGAAGTGCTGGACCAACATAAATTAGGAAAGAAGCACAAAAGGAACTTGGAAAAACTAAGAGAATCATTGAAACCAACCCAAGTTCAACCATCTGGGTCATCTAATCCCGTAATAGGACCCCAATTACCAGACAACAAGAGCAAATCAACCACTGGGAACAAGATTAAGAGAAAAAAAGCTGAAACCCTTGAAGACTTGGAGAAAAAGAAAAAGAAGGTTCTTGATGGTGGAGCAGCAGCTGAAGCAGTTAAGATCTGTGCTATATGTAACGTGGTGTGTAATAGTGAGACAGTCTATAATTTTCATCTTACTGGACAAAAGCATGCTGCTATGCTGAAGAAAGCATATGATCATACACAGTCCTATGCCAGTTGA 897 0.4348 MEYGNWAESLQTETPLLSFPQPSSSSYAHPPSQNTHYPSYPQNPNPSSSLPLKPPGVDPLPPSNPIMYSNHESVPIPSLIYTQTHVGAGSDSGYYVNQNWAAREAVRQFGSDPTVYAPGISVPSNGSEQSAIWWANTAAQQHVNGILNKKQKKAKTKVVQPAYCEVCKIECTGKEVLDQHKLGKKHKRNLEKLRESLKPTQVQPSGSSNPVIGPQLPDNKSKSTTGNKIKRKKAETLEDLEKKKKKVLDGGAAAEAVKICAICNVVCNSETVYNFHLTGQKHAAMLKKAYDHTQSYAS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00955 298 MobiDBLite consensus disorder prediction 44 62 - -
Vimu6g00955 298 Pfam Zinc-finger of C2H2 type 163 186 - -
Vimu6g00955 298 Pfam Zinc-finger of C2H2 type 259 282 - -
Vimu6g00955 298 MobiDBLite consensus disorder prediction 14 43 - -
Vimu6g00955 298 SUPERFAMILY beta-beta-alpha zinc fingers 156 194 IPR036236 -
Vimu6g00955 298 SMART ZnF_U1_5 159 193 IPR003604 GO:0003676|GO:0008270
Vimu6g00955 298 SMART ZnF_U1_5 255 289 IPR003604 GO:0003676|GO:0008270
Vimu6g00955 298 PANTHER ZINC FINGER PROTEIN 385B-LIKE 21 291 - -
Vimu6g00955 298 MobiDBLite consensus disorder prediction 194 232 - -
Vimu6g00955 298 Gene3D Classic Zinc Finger 146 193 - -
Vimu6g00955 298 Gene3D Classic Zinc Finger 225 289 - -
Vimu6g00955 298 MobiDBLite consensus disorder prediction 14 65 - -
Vimu6g00955 298 MobiDBLite consensus disorder prediction 196 223 - -
Vimu6g00955 298 SUPERFAMILY beta-beta-alpha zinc fingers 257 289 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00955 Vimu-Chr6 10413668 10416323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00955 164 292 C2H2 Transcription Factor Family AT5G61190 30.986 1.47e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00955 - - gmx:100814580 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00955 6 10413668 10416323 Vimu6g00955 6 10413668 10416323 ECH