Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00946 ATGGGATTGAAACTTACAAAGCAGGAACCACCCAAAGCTGAGGACCTAAGTATACATCATCACATGATCAATTACCTAACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGTAGAAGAATGCTTATAGCTGGTTATGATCTTGACATGTCATATATCACCGATAGAGTATTAGCAATGTCATTTCCTTCTCAACGAATGCGAGCAATGTATCGAAATCCTCTCTGGCAGGTTAAATCTGTGTTGGACATGAGACATTATGAGCATTATAAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCTGCTCACTTTTATGGACGTGTGGAAGCATACCCCTTTGATGATAACCATGTGCCATCTCTTGAAATGATTAGAGATTTCTGTGAAAGTGTGGATTCATGGCTGTCAAGTGACCCAAAAAATATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACAGGATTAATGGTGTGTGCATACTTAACTTACTGCGGCATGTCAGCAGATGAGGCTCTTCAACTGTATGCAGACAGACGAACAACCAATAATGAAGGAGTATCAATACCAAGTCAAAGAAGATATGTGGCATATTGGGACAGTCTACTTTCAAATTGTGGCCCAAGAGAAAGTGGAAATGGAACACTAAAAGTGAAGTTGCCTCTACCGTCTAGCAGAGAATTACGGCGAATCCGGCTTTATGATACAGTCAACATTGACACTATATTCTTTGTCATCTCAGAACTACAAGAGGCTAGTTGGAATGCTTGTACAAAACTGATTCCTAATCAGGTGTATCGTCCACCAGTGGAAGCTTACCGTAGCAGCTGTAGACAGATTAAGAAAGGGTATCAGAGAAACAACAGCCCTCGCTATTATATATCTGTTCTTGAAGATGATAGTGATGGAAAGCAATCAGAAACAGAAGAACCTCGCATTGTAGTTCAAATGGACACAGAGAGTCCTGTTATATACCAGAAGTCATGTTTGGACCATTACTTTGATAAACCTATAAAAGTAAGTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGTGGTCGCCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAAGAACAGCTTGCTACAGCTCACAGTACAAGAGTTGGACAAAGTTGGGAAGAAGGGAAGCTCAATATGTGGTCCTGACTTCTGCCTAGAATTATTGTTTGGTCCTGCTAATACAGGATATTCGTCATCAAATATATCCAATGATGAACACTCTAGTGATGATTCTTTATAA 1281 0.3888 MGLKLTKQEPPKAEDLSIHHHMINYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPSQRMRAMYRNPLWQVKSVLDMRHYEHYKIYNLCIEESYDPAHFYGRVEAYPFDDNHVPSLEMIRDFCESVDSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVAYWDSLLSNCGPRESGNGTLKVKLPLPSSRELRRIRLYDTVNIDTIFFVISELQEASWNACTKLIPNQVYRPPVEAYRSSCRQIKKGYQRNNSPRYYISVLEDDSDGKQSETEEPRIVVQMDTESPVIYQKSCLDHYFDKPIKVSGDVRVIFYEKMIGGRLFYCCFNTAFIKNSLLQLTVQELDKVGKKGSSICGPDFCLELLFGPANTGYSSSNISNDEHSSDDSL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00946 426 Pfam C2 domain of PTEN tumour-suppressor protein 329 403 IPR014020 -
Vimu6g00946 426 ProSiteProfiles Phosphatase tensin-type domain profile. 40 209 IPR029023 -
Vimu6g00946 426 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 183 IPR000387 GO:0016311|GO:0016791
Vimu6g00946 426 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 310 405 IPR035892 -
Vimu6g00946 426 Gene3D - 278 408 - -
Vimu6g00946 426 CDD PTP_PTEN 50 205 IPR045101 GO:0016791
Vimu6g00946 426 Gene3D Protein tyrosine phosphatase superfamily 26 210 IPR029021 -
Vimu6g00946 426 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 27 209 - -
Vimu6g00946 426 Pfam Tyrosine phosphatase family 142 180 IPR026893 GO:0004721
Vimu6g00946 426 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 20 415 - -
Vimu6g00946 426 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Vimu6g00946 426 ProSiteProfiles C2 tensin-type domain profile. 260 406 IPR014020 -
Vimu6g00946 426 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 207 IPR029021 -
Vimu6g00946 426 SMART PTEN_C2_2 224 405 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00946 Vimu-Chr6 10333422 10345558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00946 1 410 Protein tyrosine phosphatase (PTP) family AT5G39400 65.942 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00946 K01110 - gmx:100809938 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00946 6 10333422 10345558 Vimu6g00946 6 10333422 10345558 ECH