Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00944 ATGGGAGAGAAGGAGAACCATGTTGTGGTAGAAAGTGCGGACACTGAAACCACCCTCCGTGCTATGGTGCTGGGTTCCAACGTGGTGTTTCCCGCGGCTCTAAAAGCTGCAATTGAGCTCAACGTGTTTGACATAATTGCGAAGGAAGGTTCGGCGGAGAGTGGTGGGTTCATGTCACCCCCTGAAATCGCTTCCAAGTTATTGATACCAAAACAACAACAACAACAACGTGATTTGGCTAATCGACTGGAGCGTTTGTTGCGATTGCTTGCTAGCTACTCTCTTCTCACTGTTTCTTCTCGCATCGACGGAGATGGTGGCAGCGTGAGAGTTTATGGAGTTTCCGCATCGGGTAAATACTTCGTGCGTGATGAAAATGGTGATGGTTACCTCGCTTCTTTCACTTCGTTTCTGTGTCACCCTGCATTATCAGGGGTGTGGCTGAATTTTAAGGAAGTGGTTATTGATCCTGAGATTGACCTATTCAAGAAGGTTCATGGAATGTCCAAGTTCGAATACTTTGGGAAATATCTTGAAATAAACCATGTATTTAACACAGCAATGCATGACATTTGCACCACCCACATGAAAAAAATACTTGAAGTATACACAGGATACGAGGGCATATCAACTTTGGTTGATGTAGGAGGTGGAACTGGACAGTGTCTCAAAATGATCATCTCCAAATACCCTTCAATTAAGGGAATTAATTTTGACCTCCCACATGTAATTGAAAACTCATCACCCATTCCAGGGGTTGAGCATGTTGGGGGGAATATGTTTGAAGGTGTTCCACAGGGTGACGCAATTATGCTTAAGGCTATAACCCATAATTGGTCCGATGAAAAAGTCATAGAACTTTTGAGCAATTGTCACAAAGCTTTGCCACCAAAGGGAAAGGTCATTGTTGGGGATTTCATACTTCCAGAAGATCCAGAACCCACAAATGAACATAAAATGATTTCAATTCTTGATAACATCATGTTTATTACTCCTGGTGGAAGGGAAAGAACTGAGAAAGAATTTGATAGTCTGGGCAAGAGTTCTGGATTTTCTAGGTTTGAAGTTGTCTGTCGAGCTTTCTCTACAATGGCGGTGATGGAATTTTACAAATAA 1116 0.4265 MGEKENHVVVESADTETTLRAMVLGSNVVFPAALKAAIELNVFDIIAKEGSAESGGFMSPPEIASKLLIPKQQQQQRDLANRLERLLRLLASYSLLTVSSRIDGDGGSVRVYGVSASGKYFVRDENGDGYLASFTSFLCHPALSGVWLNFKEVVIDPEIDLFKKVHGMSKFEYFGKYLEINHVFNTAMHDICTTHMKKILEVYTGYEGISTLVDVGGGTGQCLKMIISKYPSIKGINFDLPHVIENSSPIPGVEHVGGNMFEGVPQGDAIMLKAITHNWSDEKVIELLSNCHKALPPKGKVIVGDFILPEDPEPTNEHKMISILDNIMFITPGGRERTEKEFDSLGKSSGFSRFEVVCRAFSTMAVMEFYK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00944 371 PIRSF O-mtase 2 371 IPR016461 GO:0008168
Vimu6g00944 371 CDD AdoMet_MTases 211 308 - -
Vimu6g00944 371 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Vimu6g00944 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 368 IPR029063 -
Vimu6g00944 371 Gene3D - 29 199 IPR036388 -
Vimu6g00944 371 FunFam Caffeic acid O-methyltransferase 125 371 - -
Vimu6g00944 371 SUPERFAMILY "Winged helix" DNA-binding domain 15 125 IPR036390 -
Vimu6g00944 371 FunFam Caffeic acid 3-O-methyltransferase 1 121 - -
Vimu6g00944 371 PANTHER O-METHYLTRANSFERASE 21 361 IPR016461 GO:0008168
Vimu6g00944 371 Gene3D Vaccinia Virus protein VP39 181 360 IPR029063 -
Vimu6g00944 371 Pfam Dimerisation domain 33 91 IPR012967 GO:0046983
Vimu6g00944 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 371 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00944 Vimu-Chr6 10326935 10329402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00944 10 361 Monolignol Biosynthesis Gene Families AT5G54160 48.442 7.86e-107 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00944 - - gmx:100798295 594.349