Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00939 ATGTCCACTCCCAACGCCGACTCCGGCACGGCGCCGCATCCGCGCCCCACCATCACACTTCCTCCTCGTCCCTCCGCCGAGGCCTTTTTCTCCGCTGCTGGCGGCGCTAGCCCCGGTCCCATGACCCTCGTCTCCAGCTTCTTCGGTTCTGATGCCGCCGCCGACTGCCGCTCCTTCTCCCAGCTTCTTGCTGGCGCCATGGCCTCCCCGATGGCCTTCTCTGCCACCGTGGCCGACAACTCCGGCAAGGACGATGATGGGCCCCACAAGGGCTTCAAGCAGAGCAGACCCATGAATTTGGTCATTGCTCGTTCCCCTGTCTTCACTGTTCCACCCGGGTTGAGCCCTTCTGGGTTTCTTAACTCCCCTGGCTTCTTTTCCCCTCAGCGCTTCCTGAAGGTGTGTTGTGAGGATGAATTTCAGAAGGGTTGTGGTGTTTTTAAGGGTGTGGGATCGGTTGATGGGTATGGGGGATTGGAGTTTGGTGTTTTTGGGGTTATCAGTGTCTTTGCAGGAGGTGCCTTGGACTACTTCACTAGTGTCGAAGGATTTCTGGGTTGTGGAGTTGTATGTGTGGATTTTCAGACAAGGGTTGCTCTAGTGAAGCCAGTGGGATTTAGATCACACTTTTTCAAAATGTCAAAAGTTTTAGAGAGCCCCTTTGGGATGTCTCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCGCAATCTCATATGCACATGCAAGCTGATTACCAGATGCATCCAGTAACTGCCCCTACTGAACCACCTGTACAACAGCCATCTTTTGCTCTAAATGAAGCTTCAGAGCAGCAAATAGTTCCATCTGTATCAGAAGCTAAAAATGCTCAACTGGAAACGTCGGATATCTCACAGGCTGATAAGAAATATCAGCTGGCTTCCCAGGCCATTGACAAGCCTGCAGATGATGGCTACAACTGGCGCAAGTATGGGCAGAAGCAGGTTAAAGGCAGCGAGTATCCAAGGAGCTACTACAAATGTACACATCTGAATTGCCTAGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGACACATAACTGAAATTATATATAAAGGTCAGCATAACCATGAAAAGCCTCAGGCAAATAGACGTGTCAAGGATAATAGTGATTCAAATGGAAGTGCAATTGTTCAGCCTAAGTCTGAGTCAAATTCACAAGGTTGGGTTGGACAACAAGTAAACAAGTTTAGTGAAAACATTCCTGATTGTTCAGTTCCTGAAAGTGATCAGATCTCCAATCAAGGGGCACCTAGGCAACTACTACCTGGGTCAAGTGGGAGCGAGGAAGTGGGTGATGTAGATAATAGGGAAGAGGCGGACGACATTGAGCCAAACCCTAAGAGAAGGCAAGCTAAATTTCTGCTTTTCAGGAATACTGATCTTGCGGTTTCTGAAGTACCTCTTTCTCAGAAGACTGTCACAGAACCCAAAATTATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGTTACAGGTGGAGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCGAGGAGTTATTACAAATGCACAAGTGCAGGATGCAACGTGCGTAAGCATGTTGAGAGAGCTTCAACCGACCCCAAAGCTGTCATAACCACGTATGAGGGTAAGCATAATCATGATGTGCCTGCTGCTAGAAATAGCAGCCACAACACAGCTAATAGCAATTCAATGCCATTAAAACCTCACAATGTCGTACCGGAGAAGCACCCTTTGCTTAAAGACATGGATTTTGGAAGCAATGATCAAAGACCTGTACATTTGCGCTTAAAAGAAGAGCAAATCATAGTATAA 1848 0.4794 MSTPNADSGTAPHPRPTITLPPRPSAEAFFSAAGGASPGPMTLVSSFFGSDAAADCRSFSQLLAGAMASPMAFSATVADNSGKDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQRFLKVCCEDEFQKGCGVFKGVGSVDGYGGLEFGVFGVISVFAGGALDYFTSVEGFLGCGVVCVDFQTRVALVKPVGFRSHFFKMSKVLESPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMHPVTAPTEPPVQQPSFALNEASEQQIVPSVSEAKNAQLETSDISQADKKYQLASQAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGSAIVQPKSESNSQGWVGQQVNKFSENIPDCSVPESDQISNQGAPRQLLPGSSGSEEVGDVDNREEADDIEPNPKRRQAKFLLFRNTDLAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANSNSMPLKPHNVVPEKHPLLKDMDFGSNDQRPVHLRLKEEQIIV 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00939 615 ProSiteProfiles WRKY domain profile. 307 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 SMART WRKY_cls 312 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 SMART WRKY_cls 501 560 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 SUPERFAMILY WRKY DNA-binding domain 493 561 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 MobiDBLite consensus disorder prediction 1 32 - -
Vimu6g00939 615 MobiDBLite consensus disorder prediction 378 433 - -
Vimu6g00939 615 Gene3D WRKY domain 297 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 Gene3D WRKY domain 486 562 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 FunFam WRKY transcription factor 300 372 - -
Vimu6g00939 615 Pfam WRKY DNA -binding domain 313 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 Pfam WRKY DNA -binding domain 502 558 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 MobiDBLite consensus disorder prediction 563 579 - -
Vimu6g00939 615 FunFam WRKY transcription factor 33 488 554 - -
Vimu6g00939 615 ProSiteProfiles WRKY domain profile. 496 561 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 SUPERFAMILY WRKY DNA-binding domain 311 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g00939 615 MobiDBLite consensus disorder prediction 361 377 - -
Vimu6g00939 615 MobiDBLite consensus disorder prediction 557 580 - -
Vimu6g00939 615 MobiDBLite consensus disorder prediction 361 458 - -
Vimu6g00939 615 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 222 576 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00939 Vimu-Chr6 10297414 10302062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00939 210 614 WRKY Transcription Factor Family AT2G03340 52.899 4.51e-116 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g00939 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00939 - - gmx:100796679 707.983